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多模态聚类揭示了结直肠癌生存中无事件患者亚组。

Multi-modal clustering reveals event-free patient subgroup in colorectal cancer survival.

作者信息

Janakarajan Nikita, Larghero Guillaume, Rodríguez Martínez María

机构信息

IBM Research Europe, Rüschlikon, Switzerland.

D-INFK, ETH Zürich, Zürich, Switzerland.

出版信息

NPJ Syst Biol Appl. 2025 Aug 2;11(1):86. doi: 10.1038/s41540-025-00557-3.

DOI:10.1038/s41540-025-00557-3
PMID:40753169
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12318085/
Abstract

Colorectal cancer (CRC) benefits from a multi-omics-based stratification in the context of survival. Our TCGA-based study employs targeted feature selection and unsupervised clustering to stratify patients based on disease-specific survival, identifying an event-free subgroup undetectable with unimodal data or established consensus molecular subtypes. An analysis of variance and gene set enrichment coupled with clinical characterisation of the clusters reveal findings that support multi-omics-driven precision medicine in CRC.

摘要

在生存方面,结直肠癌(CRC)受益于基于多组学的分层。我们基于TCGA的研究采用靶向特征选择和无监督聚类,根据疾病特异性生存对患者进行分层,识别出单峰数据或既定的共识分子亚型无法检测到的无事件亚组。方差分析和基因集富集分析,再结合各聚类的临床特征分析,揭示了支持CRC中多组学驱动的精准医学的研究结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d26/12318085/08e8842cfa1d/41540_2025_557_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d26/12318085/91b74fbfe228/41540_2025_557_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d26/12318085/08e8842cfa1d/41540_2025_557_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d26/12318085/91b74fbfe228/41540_2025_557_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d26/12318085/08e8842cfa1d/41540_2025_557_Fig2_HTML.jpg

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本文引用的文献

1
Genome wide identification of novel DNA methylation driven prognostic markers in colorectal cancer.全基因组鉴定结直肠癌中新的 DNA 甲基化驱动的预后标志物。
Sci Rep. 2024 Jul 8;14(1):15654. doi: 10.1038/s41598-024-60351-9.
2
Global cancer burden growing, amidst mounting need for services.全球癌症负担不断增加,对服务的需求也日益迫切。
Saudi Med J. 2024 Mar;45(3):326-327.
3
End-to-end prognostication in colorectal cancer by deep learning: a retrospective, multicentre study.深度学习在结直肠癌中的端到端预后预测:一项回顾性、多中心研究。
Lancet Digit Health. 2024 Jan;6(1):e33-e43. doi: 10.1016/S2589-7500(23)00208-X.
4
Analyzing aberrant DNA methylation in colorectal cancer uncovered intangible heterogeneity of gene effects in the survival time of patients.分析结直肠癌中异常的 DNA 甲基化,揭示了患者生存时间中基因效应的无形异质性。
Sci Rep. 2023 Dec 13;13(1):22104. doi: 10.1038/s41598-023-47377-1.
5
Systematic comparison of multi-omics survival models reveals a widespread lack of noise resistance.系统比较多组学生存模型揭示广泛缺乏抗噪性。
Cell Rep Methods. 2023 Apr 24;3(4):100461. doi: 10.1016/j.crmeth.2023.100461.
6
KEGG for taxonomy-based analysis of pathways and genomes.KEGG 用于基于分类的途径和基因组分析。
Nucleic Acids Res. 2023 Jan 6;51(D1):D587-D592. doi: 10.1093/nar/gkac963.
7
Epigenome-Wide DNA Methylation Profiling in Colorectal Cancer and Normal Adjacent Colon Using Infinium Human Methylation 450K.使用Infinium Human Methylation 450K对结直肠癌及癌旁正常结肠组织进行全基因组DNA甲基化分析。
Diagnostics (Basel). 2022 Jan 14;12(1):198. doi: 10.3390/diagnostics12010198.
8
A panel of DNA methylation markers for the classification of consensus molecular subtypes 2 and 3 in patients with colorectal cancer.用于结直肠癌患者共识分子亚型 2 和 3 分类的一组 DNA 甲基化标志物。
Mol Oncol. 2021 Dec;15(12):3348-3362. doi: 10.1002/1878-0261.13098. Epub 2021 Sep 30.
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Novel therapeutic strategies: targeting epithelial-mesenchymal transition in colorectal cancer.新型治疗策略:靶向结直肠癌中的上皮-间充质转化。
Lancet Oncol. 2021 Aug;22(8):e358-e368. doi: 10.1016/S1470-2045(21)00343-0.
10
Identification of the miRNA signature and key genes in colorectal cancer lymph node metastasis.结直肠癌淋巴结转移中miRNA特征及关键基因的鉴定
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