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A treasure trove of 1034 actinomycete genomes.1034 株放线菌基因组宝库。
Nucleic Acids Res. 2024 Jul 22;52(13):7487-7503. doi: 10.1093/nar/gkae523.
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antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation.antiSMASH 7.0:用于检测、调控、化学结构和可视化的全新且改进的预测功能。
Nucleic Acids Res. 2023 Jul 5;51(W1):W46-W50. doi: 10.1093/nar/gkad344.
4
Expanding the genomic encyclopedia of with 824 isolate reference genomes.利用824个分离株参考基因组扩展[具体研究对象]的基因组百科全书。 (注:原文中“Expanding the genomic encyclopedia of ”后面缺少具体内容)
Cell Genom. 2022 Nov 11;2(12):100213. doi: 10.1016/j.xgen.2022.100213. eCollection 2022 Dec 14.
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MediaDive: the expert-curated cultivation media database.Mediadive:专家策划的栽培培养基数据库。
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6
Pan-Genome of the Genus and Prioritization of Biosynthetic Gene Clusters With Potential to Produce Antibiotic Compounds.属的泛基因组以及具有产生抗生素化合物潜力的生物合成基因簇的优先级排序。
Front Microbiol. 2021 Sep 28;12:677558. doi: 10.3389/fmicb.2021.677558. eCollection 2021.
7
Mini review: Genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in .简短综述:用于鉴定……中次生代谢物生物合成基因簇的基因组挖掘方法
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Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
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IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.IMG/M v.5.0:一个用于微生物基因组和微生物组的集成数据管理和比较分析系统。
Nucleic Acids Res. 2019 Jan 8;47(D1):D666-D677. doi: 10.1093/nar/gky901.
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Circlator: automated circularization of genome assemblies using long sequencing reads.Circlator:利用长测序读段实现基因组组装的自动化环化
Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.

DSM 41897的基因组序列。

Genome sequence of DSM 41897.

作者信息

Christenson Braden, Nouioui Imen, Daum Chris, Huntemann Marcel, Seshadri Rekha, Stephens Craig

机构信息

Department of Chemistry and Biochemistry, Santa Clara University, Santa Clara, California, USA.

Leibniz Institute DSMZ, German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.

出版信息

Microbiol Resour Announc. 2025 Sep 11;14(9):e0050625. doi: 10.1128/mra.00506-25. Epub 2025 Aug 11.

DOI:10.1128/mra.00506-25
PMID:40788022
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12424369/
Abstract

We report the genomic DNA sequence of the actinomycete DSM 41897. The genome assembled as two linear chromosomal contigs (4,434,406 bp and 3,992,024 bp) and a circular plasmid (12,008 bp), with an overall GC content of 71.2%, and 33 predicted biosynthetic gene clusters for potential secondary metabolites.

摘要

我们报告了放线菌DSM 41897的基因组DNA序列。该基因组组装成两个线性染色体重叠群(分别为4,434,406 bp和3,992,024 bp)和一个环状质粒(12,008 bp),总体GC含量为71.2%,并含有33个预测的潜在次级代谢产物生物合成基因簇。