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大肠杆菌中pOXA - 48质粒维持与传播的遗传决定因素

Genetic determinants of pOXA-48 plasmid maintenance and propagation in Escherichia coli.

作者信息

Baffert Yannick, Fraikin Nathan, Makhloufi Yasmine, Baltenneck Julie, Val Marie-Eve, Dedieu-Berne Annick, Degosserie Jonathan, Iorga Bogdan I, Bogaerts Pierre, Gueguen Erwan, Lesterlin Christian, Bigot Sarah

机构信息

Microbiologie Moléculaire et Biochimie Structurale (MMSB), Université Lyon 1, CNRS, Inserm, UMR5086, Lyon, France.

Microbiologie Adaptation et Pathogénie (MAP), Université Lyon 1, INSA de Lyon, CNRS, UMR 5240, Villeurbanne, France.

出版信息

Nat Commun. 2025 Aug 19;16(1):7734. doi: 10.1038/s41467-025-62404-7.

DOI:10.1038/s41467-025-62404-7
PMID:40830342
Abstract

Conjugative plasmids are the main drivers of antibiotic resistance dissemination contributing to the emergence and extensive spread of multidrug resistance clinical bacterial pathogens. pOXA-48 plasmids, belonging to the IncL group, emerge as the primary vehicle for carbapenem resistance in Enterobacteriaceae. Despite the problematic prevalence of pOXA-48, most research focus on epidemiology and genomics, leaving gaps in our understanding of the mechanisms behind its propagation. In this study, we use a transposon sequencing approach to identify genetic elements critical for plasmid stability, replication, and conjugative transfer. Our results identify a novel type I toxin-antitoxin system, uncharacterized essential maintenance factors, and components of the type IV secretion system and regulatory elements crucial for conjugation. This study advances our understanding of pOXA-48 biology, providing key insights into the genetic factors underlying its successful maintenance and spread in bacterial populations.

摘要

接合质粒是抗生素耐药性传播的主要驱动因素,导致多重耐药临床细菌病原体的出现和广泛传播。属于IncL组的pOXA - 48质粒成为肠杆菌科中碳青霉烯耐药性的主要载体。尽管pOXA - 48普遍存在问题,但大多数研究集中在流行病学和基因组学上,在我们对其传播背后机制的理解上留下了空白。在本研究中,我们使用转座子测序方法来鉴定对质粒稳定性、复制和接合转移至关重要的遗传元件。我们的结果鉴定出一种新型I型毒素 - 抗毒素系统、未表征的必需维持因子、IV型分泌系统的组成部分以及对接合至关重要的调控元件。这项研究推进了我们对pOXA - 48生物学的理解,为其在细菌群体中成功维持和传播的潜在遗传因素提供了关键见解。

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本文引用的文献

1
Dissecting pOXA-48 fitness effects in clinical Enterobacterales using plasmid-wide CRISPRi screens.利用全质粒CRISPR干扰筛选剖析临床肠杆菌科细菌中pOXA-48的适应性效应
Nat Commun. 2025 Aug 19;16(1):7700. doi: 10.1038/s41467-025-63082-1.
2
VirBR, a transcription regulator, promotes IncX3 plasmid transmission, and persistence of bla in zoonotic bacteria.VirBR,一种转录调控因子,促进 IncX3 质粒的传播和 bla 在人畜共患病细菌中的持续存在。
Nat Commun. 2024 Jun 28;15(1):5498. doi: 10.1038/s41467-024-49800-1.
3
An antiplasmid system drives antibiotic resistance gene integration in carbapenemase-producing Escherichia coli lineages.
一种抗质粒系统驱动碳青霉烯酶产生大肠杆菌谱系中抗生素抗性基因的整合。
Nat Commun. 2024 May 15;15(1):4093. doi: 10.1038/s41467-024-48219-y.
4
Accurate structure prediction of biomolecular interactions with AlphaFold 3.利用 AlphaFold 3 进行生物分子相互作用的精确结构预测。
Nature. 2024 Jun;630(8016):493-500. doi: 10.1038/s41586-024-07487-w. Epub 2024 May 8.
5
Global epistasis in plasmid-mediated antimicrobial resistance.质粒介导的抗菌药物耐药性的全基因组互作。
Mol Syst Biol. 2024 Apr;20(4):311-320. doi: 10.1038/s44320-024-00012-1. Epub 2024 Feb 26.
6
TreeViewer: Flexible, modular software to visualise and manipulate phylogenetic trees.TreeViewer:用于可视化和操作系统发育树的灵活、模块化软件。
Ecol Evol. 2024 Feb 1;14(2):e10873. doi: 10.1002/ece3.10873. eCollection 2024 Feb.
7
Single-cell evidence for plasmid addiction mediated by toxin-antitoxin systems.单细胞证据表明毒素-抗毒素系统介导的质粒成瘾。
Nucleic Acids Res. 2024 Feb 28;52(4):1847-1859. doi: 10.1093/nar/gkae018.
8
Antimicrobial resistance level and conjugation permissiveness shape plasmid distribution in clinical enterobacteria.抗菌药物耐药水平和接合允许性影响临床肠杆菌科细菌中质粒的分布。
Proc Natl Acad Sci U S A. 2023 Dec 19;120(51):e2314135120. doi: 10.1073/pnas.2314135120. Epub 2023 Dec 14.
9
Structural and functional diversity of type IV secretion systems.IV 型分泌系统的结构和功能多样性。
Nat Rev Microbiol. 2024 Mar;22(3):170-185. doi: 10.1038/s41579-023-00974-3. Epub 2023 Oct 9.
10
The distribution of fitness effects of plasmid pOXA-48 in clinical enterobacteria.质粒 pOXA-48 在临床肠杆菌中的适应性效应分布。
Microbiology (Reading). 2023 Jul;169(7). doi: 10.1099/mic.0.001369.