Nichols Patrick K, Marko Peter B
School of Life Sciences, University of Hawai'i at Mānoa, Honolulu, HI, United States of America.
PeerJ. 2025 Aug 25;13:e19939. doi: 10.7717/peerj.19939. eCollection 2025.
Efficient detection and management of non-indigenous species are critical for mitigating their ecological impacts. Environmental DNA (eDNA) techniques have transformed biodiversity monitoring by enabling sensitive and cost-effective surveys. This study compares the efficacy of passive eDNA samplers (PEDS) to conventional active filtration methods for detecting the cryptogenic macroalga within the Papahānaumokuākea Marine National Monument, Hawai'i, USA. Three components of the species-specific eDNA assay were evaluated: clinical sensitivity, DNA yield, and overall performance. Site-level detection sensitivity of 15-minute PEDS deployments matched that of 2-L active filtration, with both methods detecting in all cases where it was known to present. Site-occupancy models provided a robust framework for evaluating overall performance, offering critical insights into the tradeoffs of PEDS for detecting rare taxa. The success of PEDS is largely dependent on the increased number of qPCR replicates employed in this study compared to the previously developed eDNA assay for . Passive method performance resulted in lower qPCR detection rates with higher probabilities of false-positives and false-negatives. Model estimates for eDNA occupancy were similar between PEDS affixed to stationary buoys and PEDS attached to roving SCUBA divers. There was, however, a decrease in the eDNA capture rate among samples collected while on SCUBA. We also tested two passive membrane types-research-grade mixed cellulose ester filters and low-cost cotton rounds. The absorbent cotton rounds yielded greater target eDNA yields and were more reliable for inferring the presence of . However, DNA yields from PEDS were consistently lower than actively filtered samples, indicating the importance of optimizing sampling and processing protocols to balance erroneous detections. Despite these limitations, passive sampling successfully detected at low abundances (<1%), demonstrating its utility for uncovering cryptic taxa. PEDS are a cost-effective, versatile, and scalable alternative to active filtration, particularly in remote or resource-limited settings.
有效检测和管理非本地物种对于减轻其生态影响至关重要。环境DNA(eDNA)技术通过实现灵敏且经济高效的调查,改变了生物多样性监测。本研究比较了被动式eDNA采样器(PEDS)与传统主动过滤方法在美国夏威夷帕帕哈瑙莫夸基亚海洋国家纪念区内检测隐源性大型藻类的效果。评估了物种特异性eDNA检测的三个组成部分:临床敏感性、DNA产量和整体性能。15分钟PEDS部署的位点水平检测敏感性与2升主动过滤的相当,两种方法在已知存在该物种的所有情况下均能检测到。位点占用模型为评估整体性能提供了一个强大的框架,为PEDS检测稀有分类群的权衡提供了关键见解。与先前开发的用于该物种的eDNA检测相比,本研究中PEDS成功的很大程度上依赖于使用的qPCR重复次数增加。被动方法的性能导致qPCR检测率较低,假阳性和假阴性概率较高。固定在固定浮标上的PEDS和附着在巡回水肺潜水员身上的PEDS对该物种eDNA占用的模型估计相似。然而,在水肺潜水时采集的样本中eDNA捕获率有所下降。我们还测试了两种被动膜类型——研究级混合纤维素酯过滤器和低成本棉轮。吸水棉轮产生了更高的目标eDNA产量,并且在推断该物种存在时更可靠。然而,PEDS的DNA产量始终低于主动过滤的样本,这表明优化采样和处理方案以平衡错误检测的重要性。尽管存在这些局限性,被动采样成功地在低丰度(<1%)下检测到了该物种,证明了其在发现隐秘分类群方面的效用。PEDS是主动过滤的一种经济高效、通用且可扩展的替代方法,特别是在偏远或资源有限的环境中。