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台湾(禾本科:竹亚科:青篱竹族)叶绿体全基因组的系统发育基因组学见解

Phylogenomic insights from the complete chloroplast genome of (poaceae: bambusoideae: arundinarieae) in Taiwan.

作者信息

Kung Kuan-Ning, Chang Tsung-Po, Zu N-Lian, Jian Zi-Chao, Chang Kun-Cheng

机构信息

Chiayi Research Center, Taiwan Forestry Research Institute, Chiyai, Taiwan.

Wild Plants Division, Taiwan Biodiversity Research Institute, Nantou, Taiwan.

出版信息

Mitochondrial DNA B Resour. 2025 Sep 6;10(10):927-931. doi: 10.1080/23802359.2025.2556006. eCollection 2025.

DOI:10.1080/23802359.2025.2556006
PMID:40927743
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12416004/
Abstract

Hayata 1916 is a unique bamboo species endemic to Taiwan, typically found at elevations ranging from 500 to 1,500 meters. This study provides a detailed analysis of the complete chloroplast genome of for the first time. The genome spans 139,664 base pairs (bp) and consists of a large single-copy (LSC) region of 83,192 bp, a small single-copy (SSC) region of 12,869 bp, and two inverted repeat (IR) regions, each 21,798 bp in length. The plastid genome encodes a total of 129 genes, including 83 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis confirms that shares a closer phylogenetic relationship with species of within the Arundinarieae tribe, while being phylogenetically distinct from the morphologically similar .

摘要

早田竹(Hayata 1916)是台湾特有的一种独特竹种,通常生长在海拔500至1500米的地区。本研究首次对其完整叶绿体基因组进行了详细分析。该基因组跨度为139,664个碱基对(bp),由一个83,192 bp的大单拷贝(LSC)区域、一个12,869 bp的小单拷贝(SSC)区域和两个长度均为21,798 bp的反向重复(IR)区域组成。质体基因组总共编码129个基因,包括83个蛋白质编码基因、38个转运RNA(tRNA)基因和8个核糖体RNA(rRNA)基因。系统发育分析证实,在青篱竹族中,早田竹与[某属]的物种具有更近的系统发育关系,而在系统发育上与形态相似的[另一属]不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/c10318035298/TMDN_A_2556006_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/9a0121ce54dd/TMDN_A_2556006_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/7e8822fd6f8e/TMDN_A_2556006_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/c10318035298/TMDN_A_2556006_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/9a0121ce54dd/TMDN_A_2556006_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/7e8822fd6f8e/TMDN_A_2556006_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/33dc/12416004/c10318035298/TMDN_A_2556006_F0003_B.jpg

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本文引用的文献

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The complete chloroplast genome sequence of Wen, 1982.温(1982年)的完整叶绿体基因组序列。
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CPGView: A package for visualizing detailed chloroplast genome structures.CPGView:一个用于可视化详细叶绿体基因组结构的软件包。
Mol Ecol Resour. 2023 Apr;23(3):694-704. doi: 10.1111/1755-0998.13729. Epub 2023 Jan 1.
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The complete chloroplast genome of a solid type of (Bambusoideae: Poaceae), a species endemic to China.
一种中国特有的(竹亚科:禾本科)实心类型的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2021 Mar 18;6(3):978-979. doi: 10.1080/23802359.2021.1889411.
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The complete chloroplast genome of f. (Poaceae).禾本科植物f.的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2021 Feb 12;6(2):566-567. doi: 10.1080/23802359.2021.1875904.
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The complete chloroplast genome of McClure (Poaceae).麦克卢尔草(禾本科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2021 Jan 16;6(1):187-188. doi: 10.1080/23802359.2020.1860703.
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Genome skimming reveals the complete chloroplast genome of (Poaceae: Bambusoideae: Arundinarieae) with phylogenomic implication.基因组浅层测序揭示了(禾本科:竹亚科:青篱竹族)的完整叶绿体基因组及其系统发育基因组学意义。
Mitochondrial DNA B Resour. 2016 Sep 4;1(1):635-637. doi: 10.1080/23802359.2016.1214550.
7
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