禾本科植物f.的完整叶绿体基因组。
The complete chloroplast genome of f. (Poaceae).
作者信息
Ya-Ping Hu, Jie Zhou, Zhao-Yan Yu, Jia-Jia Li, Ming-Ye Xu, Qi-Rong Guo
机构信息
Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.
International Center of Bamboo and Rattan, Beijing, China.
出版信息
Mitochondrial DNA B Resour. 2021 Feb 12;6(2):566-567. doi: 10.1080/23802359.2021.1875904.
f. is a precious wood-use bamboo resource, with almost solid stem. The complete chloroplast genome of the f. was the first time to assemble from Illumina pair-end sequencing data in this work. The total genome size of f. was 156,559 bp in length, containing a large single-copy (LSC) region of 89,200 bp, a small single-copy (SSC) region of 14,876 bp, and a pair of inverted repeat (IR) regions of 23,798 bp. The overall GC content of the genome was 36.12%, and the corresponding values of the LSC, SSC, and IR regions were 36.98, 33.15, and 44.22%, respectively. A total of 136 genes were annotated, including 88 protein-coding genes, 40 tRNA genes, and 8 rRNA genes. Phylogenetic analysis results strongly supported that f. was closely related to .
f. 是一种珍贵的可用于木材的竹资源，茎几乎实心。在本研究中，首次从Illumina双端测序数据组装得到了f. 的完整叶绿体基因组。f. 的基因组总长度为156,559 bp，包含一个89,200 bp的大单拷贝（LSC）区域、一个14,876 bp的小单拷贝（SSC）区域和一对23,798 bp的反向重复（IR）区域。基因组的总体GC含量为36.12%，LSC、SSC和IR区域的相应值分别为36.98%、33.15%和44.22%。总共注释了136个基因，包括88个蛋白质编码基因、40个tRNA基因和8个rRNA基因。系统发育分析结果有力地支持了f. 与. 密切相关。
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