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多组学数据揭示心脏黏液瘤的起源。

Multi-omics data reveal the origin of cardiac myxoma.

作者信息

Liu Shengzhong, Zhang Wanfeng, Sun Huajun, Zheng Chenqing, Huang Keli, Fan Chengming, Lai Rensheng, Yin Mingzhu, Lan Jie, Wu Xiushan, Ran Longke, Li Xiaoping

机构信息

Department of Cardiovascular Surgery, Sichuan Provincial People's Hospital, School of Medicine, University of Electronic Science and Technology of China, Chengdu, China.

Department of Bioinformatics, College of Artificial Intelligence Medicine, Chongqing Medical University, Chongqing, China.

出版信息

Commun Biol. 2025 Sep 26;8(1):1373. doi: 10.1038/s42003-025-08752-y.

DOI:10.1038/s42003-025-08752-y
PMID:41006804
Abstract

Cardiac myxoma, the most common primary heart tumor, remains poorly understood at the molecular level. Here, we combined single-nucleus RNA sequencing, third-generation transcriptomics, and untargeted metabolomics to dissect its origin and pathology. Single-cell analyses demonstrate an endothelial origin driven by aberrant endothelial-to-mesenchymal transition (EndMT), with pseudotime and RNA-velocity tracing a continuum from endothelial-like to mesenchymal-like and metabolically active states. We identify two distinct myxoma subtypes: Subtype 1, marked by MAPK/WNT/EGFR pathway activation, and Subtype 2, characterized by ribosomal and oxidative phosphorylation signatures alongside immune-evasive programs. Third-generation data highlight extracellular matrix remodeling and endothelial signaling, while metabolomics reveal dysregulated purine, nicotinic acid, and nicotinamide metabolism. Notably, MET-PTK2 signaling emerges as a potential driver of tumor initiation and progression. These integrated findings define the cellular architecture and metabolic adaptations of cardiac myxoma and lay the foundation for future interventions.

摘要

心脏黏液瘤是最常见的原发性心脏肿瘤,在分子水平上仍未被充分了解。在这里,我们结合单核RNA测序、第三代转录组学和非靶向代谢组学来剖析其起源和病理。单细胞分析表明,其起源于内皮细胞,由异常的内皮-间充质转化(EndMT)驱动,通过拟时间和RNA速度追踪从内皮样到间充质样和代谢活跃状态的连续过程。我们识别出两种不同的黏液瘤亚型:1型,以MAPK/WNT/EGFR途径激活为特征;2型,以核糖体和氧化磷酸化特征以及免疫逃避程序为特征。第三代数据突出了细胞外基质重塑和内皮信号传导,而代谢组学揭示了嘌呤、烟酸和烟酰胺代谢失调。值得注意的是,MET-PTK2信号传导成为肿瘤发生和进展的潜在驱动因素。这些综合发现定义了心脏黏液瘤的细胞结构和代谢适应性,为未来的干预奠定了基础。

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Multi-omics data reveal the origin of cardiac myxoma.多组学数据揭示心脏黏液瘤的起源。
Commun Biol. 2025 Sep 26;8(1):1373. doi: 10.1038/s42003-025-08752-y.
2
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本文引用的文献

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CellPhoneDB v5: inferring cell-cell communication from single-cell multiomics data.CellPhoneDB v5:从单细胞多组学数据推断细胞间通讯
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Blood immune profiles reveal a CXCR3/CCR5 axis of dysregulation in early sepsis.血液免疫图谱揭示了早期脓毒症中CXCR3/CCR5轴的失调。
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Revealing the crucial roles of suppressive immune microenvironment in cardiac myxoma progression.揭示抑制性免疫微环境在心脏黏液瘤进展中的关键作用。
Signal Transduct Target Ther. 2024 Aug 2;9(1):193. doi: 10.1038/s41392-024-01912-2.
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Endothelial-to-Mesenchymal Transition in Cardiovascular Pathophysiology.心血管病理生理学中的内皮细胞向间充质转化。
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Resolving the heterogeneous tumour microenvironment in cardiac myxoma through single-cell and spatial transcriptomics.通过单细胞和空间转录组学解析心脏黏液瘤中的异质性肿瘤微环境
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Collagen VI Is a Gi-Biased Ligand of the Adhesion GPCR GPR126/ADGRG6.胶原 VI 是黏附 GPCR GPR126/ADGRG6 的 Gi 偏向配体。
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Wnt/β-Catenin Signaling Pathway in the Development and Progression of Colorectal Cancer.Wnt/β-连环蛋白信号通路在结直肠癌发生发展中的作用
Cancer Manag Res. 2023 May 23;15:435-448. doi: 10.2147/CMAR.S411168. eCollection 2023.
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Semin Cancer Biol. 2023 Jul;92:130-138. doi: 10.1016/j.semcancer.2023.04.007. Epub 2023 Apr 15.
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A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data.一种从 scRNA-seq 数据中检测肿瘤克隆拷贝数亚结构的变分算法。
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