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细菌基因组的修饰图谱

Modification profiles of bacterial genomes.

作者信息

Brooks J E, Roberts R J

出版信息

Nucleic Acids Res. 1982 Feb 11;10(3):913-34. doi: 10.1093/nar/10.3.913.

DOI:10.1093/nar/10.3.913
PMID:6278441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC326211/
Abstract

DNAs were prepared from twenty-six bacterial species and digested with a variety of restriction endonucleases to determine what modifications the DNAs carry. Several general conclusions could be made: 1) First, in no instance was the DNA of a restriction enzyme. 2) The specificity of the DNA modification was the same as that of its restriction counterpart; there were no cases of the DNAs being modified against a less specific class of restriction enzymes. 3) In most (but not all) cases, the resistance of a bacterium's DNA to its own restriction enzyme could be generalized to include resistance to all other restriction enzymes with the same specificity (isoschizomers). 4) DNA modified within the central tetramer of a recognition sequence is usually protected against cleavage by all related hexameric enzymes possessing that central tetramer. Only three families of DNA presented in this study disobey this rule. 5) Finally, a significant number of cases emerge where bacterial DNA carries a modification but no corresponding restriction endonuclease activity.

摘要

从26种细菌中提取DNA,并使用多种限制性内切酶进行消化,以确定DNA携带了哪些修饰。可以得出几个一般性结论:1)首先,在任何情况下,DNA都不是限制性酶。2)DNA修饰的特异性与其限制性对应物相同;不存在针对特异性较低的限制性酶类别对DNA进行修饰的情况。3)在大多数(但不是所有)情况下,细菌DNA对自身限制性酶的抗性可以推广到包括对所有具有相同特异性的其他限制性酶(同裂酶)的抗性。4)在识别序列的中央四聚体内修饰的DNA通常受到所有具有该中央四聚体的相关六聚体酶切割的保护。本研究中仅呈现的三个DNA家族不遵守此规则。5)最后,出现了大量细菌DNA携带修饰但没有相应限制性内切酶活性的情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/2752610cf17c/nar00372-0154-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/b36fe5f1e42e/nar00372-0140-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/5258e8b787ff/nar00372-0153-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/d274f24108d7/nar00372-0153-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/2752610cf17c/nar00372-0154-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/b36fe5f1e42e/nar00372-0140-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/5258e8b787ff/nar00372-0153-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/d274f24108d7/nar00372-0153-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b875/326211/2752610cf17c/nar00372-0154-a.jpg

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本文引用的文献

1
A DNA methylase from Thermus thermophilus HB8.来自嗜热栖热菌HB8的一种DNA甲基化酶。
J Biochem. 1980 Sep;88(3):737-47. doi: 10.1093/oxfordjournals.jbchem.a133026.
2
DNA methyltransferases affecting the sequence 5'CCGG.影响5'CCGG序列的DNA甲基转移酶
Nucleic Acids Res. 1981 Jun 25;9(12):2753-9. doi: 10.1093/nar/9.12.2753.
3
Restriction enzyme digestion of hemimethylated DNA.半甲基化DNA的限制性内切酶消化
作为肺炎链球菌分子流行病学标志物的前噬菌体携带情况
J Clin Microbiol. 1999 Oct;37(10):3308-15. doi: 10.1128/JCM.37.10.3308-3315.1999.
4
Restriction enzyme HincII is sensitive to methylation of cytosine that occurs 5' to the recognition sequence.限制性内切酶HincII对识别序列5'端发生的胞嘧啶甲基化敏感。
Nucleic Acids Res. 1996 Mar 15;24(6):1045-6. doi: 10.1093/nar/24.6.1045.
5
Leptospira genomes are modified at 5'-GTAC.钩端螺旋体基因组在5'-GTAC处被修饰。
J Bacteriol. 1993 Jun;175(12):3913-5. doi: 10.1128/jb.175.12.3913-3915.1993.
6
Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases.位点特异性甲基化对限制性内切核酸酶和DNA修饰甲基转移酶的影响。
Nucleic Acids Res. 1993 Jul 1;21(13):3139-54. doi: 10.1093/nar/21.13.3139.
7
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases.位点特异性修饰对限制性核酸内切酶和DNA修饰甲基转移酶的影响。
Nucleic Acids Res. 1994 Sep;22(17):3640-59. doi: 10.1093/nar/22.17.3640.
8
Resistance of bacteriophage H1 to restriction and modification by Bacillus subtilis R.噬菌体H1对枯草芽孢杆菌R的限制和修饰作用的抗性
J Virol. 1983 Jun;46(3):703-8. doi: 10.1128/JVI.46.3.703-708.1983.
9
The effect of site specific methylation on restriction endonuclease cleavage (update).位点特异性甲基化对限制性内切酶切割的影响(更新)。
Nucleic Acids Res. 1983 Jan 11;11(1):r169-73. doi: 10.1093/nar/11.1.235-c.
10
Cloned restriction/modification system from Pseudomonas aeruginosa.来自铜绿假单胞菌的克隆限制/修饰系统。
Proc Natl Acad Sci U S A. 1983 Jan;80(2):402-6. doi: 10.1073/pnas.80.2.402.
Nucleic Acids Res. 1981 Jun 11;9(11):2509-15. doi: 10.1093/nar/9.11.2509.
4
Structure and mechanism of multifunctional restriction endonucleases.多功能限制性核酸内切酶的结构与机制
Annu Rev Biochem. 1981;50:285-319. doi: 10.1146/annurev.bi.50.070181.001441.
5
Cloning and expression of the Pst I restriction-modification system in Escherichia coli.Pst I 限制修饰系统在大肠杆菌中的克隆与表达。
Proc Natl Acad Sci U S A. 1981 Mar;78(3):1503-7. doi: 10.1073/pnas.78.3.1503.
6
Restriction and modification enzymes and their recognition sequences.限制酶和修饰酶及其识别序列。
Nucleic Acids Res. 1981 Jan 10;9(1):r75-96. doi: 10.1093/nar/9.1.213-c.
7
Restriction and modification in Bacillus subtilis: identification of a gene in the temperate phage SP beta coding for a BsuR specific modification methyltransferase.枯草芽孢杆菌中的限制与修饰:在温和噬菌体SPβ中鉴定出一个编码BsuR特异性修饰甲基转移酶的基因。
Mol Gen Genet. 1980;180(2):361-7. doi: 10.1007/BF00425849.
8
Deoxyribonucleic acid modifications and restriction endonuclease production in Neisseria gonorrhoeae.淋病奈瑟菌中的脱氧核糖核酸修饰与限制性内切核酸酶产生
J Bacteriol. 1981 Feb;145(2):788-95. doi: 10.1128/jb.145.2.788-795.1981.
9
The 5'-cytosine in CCGG1 is methylated in two eukaryotic DNAs and Msp I is sensitive to methylation at this site.在两个真核生物DNA中,CCGG1序列中的5'-胞嘧啶发生了甲基化,且Msp I对该位点的甲基化敏感。
Nucleic Acids Res. 1980 Sep 11;8(17):3829-40. doi: 10.1093/nar/8.17.3829.
10
Bacillus subtilis-phage phi 1 overcomes host-controlled restriction by producing BamNx inhibitor protein.枯草芽孢杆菌噬菌体phi 1通过产生BamNx抑制蛋白克服宿主控制的限制。
Mol Gen Genet. 1980;179(3):463-8. doi: 10.1007/BF00271735.