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限制酶在人类DNA多态性分析中的优化应用。

Optimal use of restriction enzymes in the analysis of human DNA polymorphism.

作者信息

Bastié-Sigeac F, Lucotte G

出版信息

Hum Genet. 1983;63(2):162-5. doi: 10.1007/BF00291537.

DOI:10.1007/BF00291537
PMID:6301975
Abstract

Numerous biological factors have an effect upon the probability of the presence of a theoretical restriction site at a given point, (1/4)n, in a DNA molecule, where n represents the number of base pairs composing the site. Indeed, it is a fact that the ratio (formula; see text) does not usually equal unity. In addition, the sequence of the nucleotides appears to change haphazardly, with certain dinucleotides present more often than others. When considering (formula; see text), it is observed that the influence of this first parameter is very important for sites with either four or six base pairs. The balance of the average frequency of each site according to the preponderance of certain dinucleotides and the G + C content has been the subject of an involved study which makes use of a certain number of restriction enzymes which are commercially available. The important frequency variations of different sites are due primarily to the presence of one or two GC doublets which go as far as reducing the frequency by a factor of 3.

摘要

许多生物学因素会影响在DNA分子中给定位置(1/4)ⁿ处存在理论限制位点的概率,其中n表示构成该位点的碱基对数量。实际上,(公式;见原文)这个比率通常不等于1是一个事实。此外,核苷酸序列似乎是随机变化的,某些二核苷酸比其他二核苷酸出现得更频繁。在考虑(公式;见原文)时,可以观察到这个第一个参数对具有四个或六个碱基对的位点的影响非常重要。根据某些二核苷酸的优势和G + C含量来平衡每个位点的平均频率,这是一项涉及使用一定数量市售限制酶的复杂研究的主题。不同位点重要的频率变化主要是由于存在一个或两个GC双峰,这甚至会使频率降低3倍。

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1
Optimal use of restriction enzymes in the analysis of human DNA polymorphism.限制酶在人类DNA多态性分析中的优化应用。
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引用本文的文献

1
DNA restriction fragment length polymorphisms and heterozygosity in the human genome.人类基因组中的DNA限制性片段长度多态性与杂合性
Hum Genet. 1984;66(1):1-16. doi: 10.1007/BF00275182.
2
Optimizing selection of restriction enzymes in the search for DNA variants.在寻找DNA变异体过程中优化限制酶的选择。
Nucleic Acids Res. 1984 Dec 11;12(23):9209-26. doi: 10.1093/nar/12.23.9209.
3
Multiple, independent restriction site polymorphisms in human DNA detected with a cDNA probe to argininosuccinate synthetase (AS).用精氨琥珀酸合成酶(AS)的cDNA探针检测到的人类DNA中多个独立的限制性位点多态性。

本文引用的文献

1
Some rules in the ordering of nucleotides in the DNA.DNA中核苷酸排列的一些规则。
Nucleic Acids Res. 1980 Oct 10;8(19):4545-62. doi: 10.1093/nar/8.19.4545.
Am J Hum Genet. 1984 Jul;36(4):736-49.
4
Polymorphisms of human albumin gene after DNA restriction by HaeIII endonuclease.经HaeIII核酸内切酶DNA酶切后人类白蛋白基因的多态性
Hum Genet. 1984;67(1):48-51. doi: 10.1007/BF00270557.
5
A new strategy for mapping the human genome.一种绘制人类基因组图谱的新策略。
J Med Genet. 1986 Oct;23(5):421-4. doi: 10.1136/jmg.23.5.421.
6
Prediction of oligonucleotide frequencies based upon dinucleotide frequencies obtained from the nearest neighbor analysis.基于通过最近邻分析获得的二核苷酸频率对寡核苷酸频率进行预测。
Nucleic Acids Res. 1990 Mar 25;18(6):1625-8. doi: 10.1093/nar/18.6.1625.