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免疫球蛋白基因的甲基化状态和DNase I敏感性:与重排相关的变化

Methylation status and DNase I sensitivity of immunoglobulin genes: changes associated with rearrangement.

作者信息

Mather E L, Perry R P

出版信息

Proc Natl Acad Sci U S A. 1983 Aug;80(15):4689-93. doi: 10.1073/pnas.80.15.4689.

DOI:10.1073/pnas.80.15.4689
PMID:6308642
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC384109/
Abstract

Immunoglobulin V kappa genes are transcriptionally silent in their germline context and become transcriptionally active upon fusion to the J kappa-C kappa region (kappa locus). To elucidate the role of chromosomal structure in this regulatory phenomenon we have investigated the DNase I sensitivity and methylation status of the kappa locus and selected V kappa genes in a variety of alleles exhibiting different rearrangement configurations and different levels of transcriptional activity. Our findings indicate that the kappa locus in either germline or rearranged contexts maintains a distinctive DNase I-sensitive, hypomethylated structure in plasmacytomas and hybridomas, irrespective of its level of transcriptional activity. In contrast, the germline V kappa genes are in less accessible regions of chromatin and more highly methylated regions of DNA. Upon fusion to the kappa locus, V kappa genes become DNase I-sensitive and hypomethylated. This effect extends several kilobases upstream of the transcriptional initiation site but does not extend to the adjacent V kappa gene or to the identical V kappa allele on the other chromosome, indicating that the structural alteration is a localized cis-acting phenomenon.

摘要

免疫球蛋白Vκ基因在其种系背景下转录沉默,而在与Jκ-Cκ区域(κ基因座)融合后变得转录活跃。为了阐明染色体结构在这种调控现象中的作用,我们研究了κ基因座以及在多种呈现不同重排构型和不同转录活性水平的等位基因中选定的Vκ基因的DNA酶I敏感性和甲基化状态。我们的研究结果表明,无论转录活性水平如何,种系或重排背景下的κ基因座在浆细胞瘤和杂交瘤中均维持一种独特的对DNA酶I敏感、低甲基化的结构。相比之下,种系Vκ基因处于染色质较难接近的区域以及DNA甲基化程度较高的区域。与κ基因座融合后,Vκ基因变得对DNA酶I敏感且低甲基化。这种效应延伸至转录起始位点上游数千碱基,但并不延伸至相邻的Vκ基因或另一染色体上相同的Vκ等位基因,这表明结构改变是一种局部的顺式作用现象。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/2ed80364805f/pnas00641-0100-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/ae7fc592e10f/pnas00641-0098-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/7829a51ca527/pnas00641-0098-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/150b6dc7c02f/pnas00641-0098-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/7a72223a5c1a/pnas00641-0098-d.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/95693b4a2cd8/pnas00641-0098-e.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/aade991a155e/pnas00641-0099-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/2ed80364805f/pnas00641-0100-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/ae7fc592e10f/pnas00641-0098-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/7829a51ca527/pnas00641-0098-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/150b6dc7c02f/pnas00641-0098-c.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/7a72223a5c1a/pnas00641-0098-d.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/95693b4a2cd8/pnas00641-0098-e.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/aade991a155e/pnas00641-0099-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f7b2/384109/2ed80364805f/pnas00641-0100-a.jpg

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Methylation status and DNase I sensitivity of immunoglobulin genes: changes associated with rearrangement.免疫球蛋白基因的甲基化状态和DNase I敏感性:与重排相关的变化
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本文引用的文献

1
Expression of a cloned adenovirus gene is inhibited by in vitro methylation.克隆腺病毒基因的表达受到体外甲基化的抑制。
Proc Natl Acad Sci U S A. 1982 Feb;79(4):1073-7. doi: 10.1073/pnas.79.4.1073.
2
Spacer DNA sequences upstream of the T-A-T-A-A-A-T-A sequence are essential for promotion of H2A histone gene transcription in vivo.T-A-T-A-A-A-T-A序列上游的间隔DNA序列对于体内H2A组蛋白基因转录的促进至关重要。
Proc Natl Acad Sci U S A. 1980 Dec;77(12):7102-6. doi: 10.1073/pnas.77.12.7102.
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Chromatin changes accompany immunoglobulin kappa gene activation: a potential control region within the gene.
使用 DNase I-聚合酶链反应和 DNase I-芯片分析测定拟南芥染色质可及性。
Plant Physiol. 2013 Aug;162(4):1794-801. doi: 10.1104/pp.113.220400. Epub 2013 Jun 5.
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Localized DNA demethylation at recombination intermediates during immunoglobulin heavy chain gene assembly.免疫球蛋白重链基因组装过程中重组中间体的局部 DNA 去甲基化。
PLoS Biol. 2013;11(1):e1001475. doi: 10.1371/journal.pbio.1001475. Epub 2013 Jan 29.
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V(D)J recombination is not activated by demethylation of the kappa locus.κ轻链基因座的去甲基化不会激活V(D)J重排。
Proc Natl Acad Sci U S A. 2000 Jul 18;97(15):8467-72. doi: 10.1073/pnas.150218497.
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Chromatin remodeling directly activates V(D)J recombination.染色质重塑直接激活V(D)J重组。
Proc Natl Acad Sci U S A. 1999 Sep 14;96(19):10788-93. doi: 10.1073/pnas.96.19.10788.
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Regulation of V(D)J recombination by transcriptional promoters.转录启动子对V(D)J重组的调控
Mol Cell Biol. 1999 Apr;19(4):2773-81. doi: 10.1128/MCB.19.4.2773.
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Kappa chain monoallelic demethylation and the establishment of allelic exclusion.κ链单等位基因去甲基化与等位基因排斥的建立。
Genes Dev. 1998 Jun 15;12(12):1801-11. doi: 10.1101/gad.12.12.1801.
9
Failure of IgG production due to a defect in the opening of the chromatin structure of I gamma 1 region in a patient with IgG and IgA deficiency.一名患有IgG和IgA缺乏症的患者,由于Iγ1区域染色质结构开放缺陷导致IgG产生失败。
Clin Exp Immunol. 1995 Jan;99(1):21-8. doi: 10.1111/j.1365-2249.1995.tb03467.x.
10
The bulk chromatin structure of a murine transgene does not vary with its transcriptional or DNA methylation status.小鼠转基因的整体染色质结构不会随其转录或DNA甲基化状态而变化。
Mol Cell Biol. 1995 Jan;15(1):572-9. doi: 10.1128/MCB.15.1.572.
染色质变化伴随免疫球蛋白κ基因激活:该基因内的一个潜在控制区域。
Nature. 1982 Sep 30;299(5882):449-51. doi: 10.1038/299449a0.
4
Multiple immunoglobulin heavy-chain gene transcripts in Abelson murine leukemia virus-transformed lymphoid cell lines.艾贝尔逊鼠白血病病毒转化的淋巴样细胞系中的多种免疫球蛋白重链基因转录物
Mol Cell Biol. 1982 Apr;2(4):386-400. doi: 10.1128/mcb.2.4.386-400.1982.
5
Immunoglobulin heavy chain genes: demethylation accompanies class switching.免疫球蛋白重链基因:去甲基化伴随类别转换。
Proc Natl Acad Sci U S A. 1981 Dec;78(12):7497-501. doi: 10.1073/pnas.78.12.7497.
6
Transcriptional regulation of immunoglobulin V genes.免疫球蛋白V基因的转录调控。
Nucleic Acids Res. 1981 Dec 21;9(24):6855-67. doi: 10.1093/nar/9.24.6855.
7
Expression of the J chain gene during B cell differentiation is inversely correlated with DNA methylation.B细胞分化过程中J链基因的表达与DNA甲基化呈负相关。
Proc Natl Acad Sci U S A. 1981 Aug;78(8):4907-11. doi: 10.1073/pnas.78.8.4907.
8
Reorganization and expression of immunoglobulin genes: status of allelic elements.免疫球蛋白基因的重组与表达:等位基因元件的状态
Cold Spring Harb Symp Quant Biol. 1981;45 Pt 2:925-33. doi: 10.1101/sqb.1981.045.01.109.
9
Organization and expression of immunoglobulin genes in fetal liver hybridomas.胎儿肝脏杂交瘤中免疫球蛋白基因的组织与表达
Proc Natl Acad Sci U S A. 1981 Jan;78(1):247-51. doi: 10.1073/pnas.78.1.247.
10
Aberrant rearrangements contribute significantly to the allelic exclusion of immunoglobulin gene expression.异常重排对免疫球蛋白基因表达的等位基因排斥有显著贡献。
Nature. 1981 Apr 2;290(5805):372-8. doi: 10.1038/290372a0.