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真核细胞色素c在39、57、59和74位残基附近的构象。

The conformation of eukaryotic cytochrome c around residues 39, 57, 59 and 74.

作者信息

Robinson M N, Boswell A P, Huang Z X, Eley C G, Moore G R

出版信息

Biochem J. 1983 Sep 1;213(3):687-700. doi: 10.1042/bj2130687.

DOI:10.1042/bj2130687
PMID:6311172
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1152184/
Abstract

1H-n.m.r. studies of horse, tuna, Candida krusei and Saccharomyces cerevisiae cytochromes c showed that each of the proteins contains a similar cluster of residues at the bottom of the protein that assists in shielding the haem from the solvent. The relative positions of the residues forming these clusters vary continuously with temperature, and they change with the change in protein redox state. This conformational heterogeneity is discussed with reference to the conformational flexibility of cytochrome c around residues 57, 59 and 74. Spectroscopic measurements of pKa values for Lys-55 (horse and tuna cytochromes c) and His-33 and His-39 (C. krusei and S. cerevisiae cytochromes c) are in excellent agreement with expectations based on chemical-modification studies of horse cytochrome c. [Bosshard & Zürrer (1980) J. Biol. Chem. 255, 6694-6699] and on the X-ray-crystallographic structure of tuna cytochrome c [Takano & Dickerson (1981) J. Mol. Biol. 153, 79-94, 95-115].

摘要

对马、金枪鱼、克鲁斯假丝酵母和酿酒酵母细胞色素c的1H核磁共振研究表明,每种蛋白质在蛋白质底部都含有一组相似的残基,有助于保护血红素免受溶剂影响。形成这些簇的残基的相对位置随温度连续变化,并且它们会随着蛋白质氧化还原状态的变化而改变。参照细胞色素c在57、59和74位残基周围的构象灵活性讨论了这种构象异质性。对赖氨酸-55(马和金枪鱼细胞色素c)以及组氨酸-33和组氨酸-39(克鲁斯假丝酵母和酿酒酵母细胞色素c)的pKa值进行的光谱测量,与基于对马细胞色素c的化学修饰研究[博斯哈德和祖勒(1980年)《生物化学杂志》255卷,6694 - 6699页]以及金枪鱼细胞色素c的X射线晶体结构[高野和迪克森(1981年)《分子生物学杂志》153卷,79 - 94页,95 - 115页]的预期结果高度一致。

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1
The conformation of eukaryotic cytochrome c around residues 39, 57, 59 and 74.真核细胞色素c在39、57、59和74位残基附近的构象。
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2
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引用本文的文献

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Modulation of the alkaline transition in cytochrome c and cytochrome c-T by full or specific partial acetimidylation.通过完全或特定部分乙酰亚胺化对细胞色素c和细胞色素c-T中碱性转变的调节。
Biochem J. 1984 Feb 1;217(3):601-4. doi: 10.1042/bj2170601.
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The effect of complete or specific partial acetimidylation on the biological properties of cytochrome c and cytochrome c-T.完全或特定部分乙酰亚胺化对细胞色素c和细胞色素c-T生物学特性的影响。
Biochem J. 1984 Feb 1;217(3):595-9. doi: 10.1042/bj2170595.
3
Ionization of tyrosine and lysine residues in native and modified horse cytochrome c.天然和修饰的马细胞色素c中酪氨酸和赖氨酸残基的电离作用
Biochem J. 1983 Sep 1;213(3):679-86. doi: 10.1042/bj2130679.
4
Semisynthesis of cytochrome c analogues. The effect of modifying the conserved residues 38 and 39.细胞色素c类似物的半合成。修饰保守残基38和39的影响。
Biochem J. 1987 Dec 15;248(3):965-7. doi: 10.1042/bj2480965.

本文引用的文献

1
Amino-acid sequence of horse heart cytochrome c.马心脏细胞色素c的氨基酸序列。
Nature. 1961 Dec 23;192:1125-7. doi: 10.1038/1921125a0.
2
[THE C-TERMINAL AMINO ACID SEQUENCE OF TUNA FISH CYTOCHROME C].[金枪鱼细胞色素C的C末端氨基酸序列]
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[ON SPECIES SPECIFICITY OF CYTOCHROME C: COMPARISON OF THE AMINO ACID SEQUENCE OF TUNA FISH CYTOCHROME C WITH HORSE CYTOCHROME C].[关于细胞色素C的物种特异性:金枪鱼细胞色素C与马细胞色素C氨基酸序列的比较]
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Ionization of tyrosine and lysine residues in native and modified horse cytochrome c.天然和修饰的马细胞色素c中酪氨酸和赖氨酸残基的电离作用
Biochem J. 1983 Sep 1;213(3):679-86. doi: 10.1042/bj2130679.
5
Structural role of the tyrosine residues of cytochrome c.细胞色素c中酪氨酸残基的结构作用。
Biochem J. 1982 Jul 1;205(1):153-65. doi: 10.1042/bj2050153.
6
Conformation change of cytochrome c. II. Ferricytochrome c refinement at 1.8 A and comparison with the ferrocytochrome structure.细胞色素c的构象变化。II. 高铁细胞色素c在1.8埃分辨率下的精修及与亚铁细胞色素结构的比较。
J Mol Biol. 1981 Nov 25;153(1):95-115. doi: 10.1016/0022-2836(81)90529-5.
7
The asymmetric distribution of charges on the surface of horse cytochrome c. Functional implications.马细胞色素c表面电荷的不对称分布。功能意义。
J Biol Chem. 1982 Apr 25;257(8):4426-37.
8
Protein influences on porphyrin structure in cytochrome c: evidence from Raman difference spectroscopy.蛋白质对细胞色素c中卟啉结构的影响:拉曼差示光谱法提供的证据
Biochemistry. 1981 Oct 27;20(22):6485-97. doi: 10.1021/bi00525a030.
9
1H-NMR studies of structural homologies between the heme environments in horse cytochrome c and in cytochrome c-552 from Euglena gracilis.马细胞色素c与纤细裸藻细胞色素c-552血红素环境之间结构同源性的1H核磁共振研究。
Biochim Biophys Acta. 1981 Apr 28;668(2):307-20. doi: 10.1016/0005-2795(81)90038-6.
10
Redox conformation changes in refined tuna cytochrome c.精制金枪鱼细胞色素c中的氧化还原构象变化
Proc Natl Acad Sci U S A. 1980 Nov;77(11):6371-5. doi: 10.1073/pnas.77.11.6371.