Suppr超能文献

面向分子生物学家的苹果II Pascal程序。

Apple II PASCAL programs for molecular biologists.

作者信息

Malthiery B, Bellon B, Giorgi D, Jacq B

出版信息

Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):569-79. doi: 10.1093/nar/12.1part2.569.

DOI:10.1093/nar/12.1part2.569
PMID:6320099
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC321071/
Abstract

A collection of PASCAL programs designed for the Apple II microcomputer is presented. These DNA sequence handling and analysis programs are interactive and may be used even by people with no computer experience. The package allows the user to enter a sequence from the keyboard, to modify it, to generate the reverse complement, to create new sequences from parts of other ones, to display or print sequences in various formats. Some analysis tasks are also performed: Translation, searches for restriction sites, for homology with subsequences, either perfect or with an adjustable match percentage. In addition, two programs are also included: The first one allows DNA data sequences generated with a BASIC program under the CP/M operating system to be used with these PASCAL programs. The second one is designed for the automatic assembly of DNA fragments sequences, obtained with the GILBERT-MAXAM or M13 techniques, into a complete sequence.

摘要

本文展示了一组为苹果II微型计算机设计的PASCAL程序。这些DNA序列处理和分析程序是交互式的，即使没有计算机经验的人也可以使用。该软件包允许用户从键盘输入序列、修改序列、生成反向互补序列、从其他序列的部分创建新序列、以各种格式显示或打印序列。还执行一些分析任务：翻译、搜索限制酶切位点、搜索与子序列的同源性，包括完全匹配或具有可调匹配百分比的同源性。此外，还包括两个程序：第一个程序允许在CP/M操作系统下用BASIC程序生成的DNA数据序列与这些PASCAL程序一起使用。第二个程序用于将通过吉尔伯特-马克萨姆或M13技术获得的DNA片段序列自动组装成完整序列。

相似文献

1
Apple II PASCAL programs for molecular biologists.面向分子生物学家的苹果II Pascal程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):569-79. doi: 10.1093/nar/12.1part2.569.
2
Portable microcomputer software for nucleotide sequence analysis.用于核苷酸序列分析的便携式微型计算机软件。
Nucleic Acids Res. 1982 Oct 25;10(20):6451-63. doi: 10.1093/nar/10.20.6451.
3
Apple Macintosh programs for nucleic and protein sequence analyses.用于核酸和蛋白质序列分析的苹果麦金塔电脑程序。
Nucleic Acids Res. 1988 Mar 11;16(5):1837-46. doi: 10.1093/nar/16.5.1837.
4
JINN, an integrated software package for molecular geneticists.JINN，一款面向分子遗传学家的集成软件包。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):657-64. doi: 10.1093/nar/12.1part2.657.
5
Microcomputer programs for back translation of protein to DNA sequences and analysis of ambiguous DNA sequences.用于将蛋白质反向翻译为DNA序列以及分析模糊DNA序列的微机程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):819-23. doi: 10.1093/nar/12.1part2.819.
6
Apple software for analysis of the size of restriction fragments.用于分析限制性片段大小的苹果软件。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):689-94. doi: 10.1093/nar/12.1part2.689.
7
Plasmid mapping computer program.质粒图谱计算机程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):717-29. doi: 10.1093/nar/12.1part2.717.
8
Interactive computer programs for the graphic analysis of nucleotide sequence data.用于核苷酸序列数据图形分析的交互式计算机程序。
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):665-73. doi: 10.1093/nar/12.1part2.665.
9
Apple II software for M13 shotgun DNA sequencing.用于M13猎枪式DNA测序的苹果II软件。
Nucleic Acids Res. 1982 Jan 11;10(1):39-49. doi: 10.1093/nar/10.1.39.
10
Microcomputer programs for DNA sequence analysis.用于DNA序列分析的微机程序。
Nucleic Acids Res. 1982 Jan 11;10(1):31-8. doi: 10.1093/nar/10.1.31.

引用本文的文献

1
Sequence studies on the soybean chloroplast 16S-23S rDNA spacer region : Comparison with other angiosperm sequences and proposal of a generalized RNA secondary structure model for the intergenic regions.大豆叶绿体 16S-23S rDNA 间隔区的序列研究：与其他被子植物序列的比较及基因间区通用 RNA 二级结构模型的提出。
Plant Mol Biol. 1987 Jan;10(1):65-82. doi: 10.1007/BF00014187.
2
An integrated software system for microcomputer management of recombinant DNA data.用于重组DNA数据微机管理的集成软件系统。
Nucleic Acids Res. 1986 Jan 10;14(1):571-4. doi: 10.1093/nar/14.1.571.
3
Assembly of overlapping DNA sequences by a program written in BASIC for 64K CP/M and MS-DOS IBM-compatible microcomputers.用为64K CP/M和MS-DOS IBM兼容微型计算机编写的BASIC程序组装重叠DNA序列。
Nucleic Acids Res. 1986 Jan 10;14(1):517-27. doi: 10.1093/nar/14.1.517.
4
Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellow mosaic virus genomic RNA.通过芜菁黄花叶病毒基因组RNA的全核苷酸测序揭示的重叠开放阅读框。
Nucleic Acids Res. 1988 Jul 11;16(13):6157-73. doi: 10.1093/nar/16.13.6157.
5
ARS activity along the yeast mitochondrial apocytochrome b region: correlation with the location of petite genomes and consensus sequences.酵母线粒体脱辅基细胞色素b区域的ARS活性：与小基因组位置和共有序列的相关性。
Curr Genet. 1987;12(8):583-9. doi: 10.1007/BF00368060.
6
Apple Macintosh programs for nucleic and protein sequence analyses.用于核酸和蛋白质序列分析的苹果麦金塔电脑程序。
Nucleic Acids Res. 1988 Mar 11;16(5):1837-46. doi: 10.1093/nar/16.5.1837.
7
Sequence and secondary structure of the central domain of Drosophila 26S rRNA: a universal model for the central domain of the large rRNA containing the region in which the central break may happen.果蝇26S rRNA中央结构域的序列与二级结构：含中央断裂可能发生区域的大rRNA中央结构域的通用模型
J Mol Evol. 1989 May;28(5):403-17. doi: 10.1007/BF02603076.

本文引用的文献

1
A convenient and adaptable package of DNA sequence analysis programs for microcomputers.一套适用于微型计算机的便捷且可适配的DNA序列分析程序包。
Nucleic Acids Res. 1982 Jan 11;10(1):51-9. doi: 10.1093/nar/10.1.51.
2
Apple II software for M13 shotgun DNA sequencing.用于M13猎枪式DNA测序的苹果II软件。
Nucleic Acids Res. 1982 Jan 11;10(1):39-49. doi: 10.1093/nar/10.1.39.
3
Microcomputer programs for DNA sequence analysis.用于DNA序列分析的微机程序。
Nucleic Acids Res. 1982 Jan 11;10(1):31-8. doi: 10.1093/nar/10.1.31.
4
Steps toward computer analysis of nucleotide sequences.核苷酸序列计算机分析的步骤。
Science. 1980 Sep 19;209(4463):1322-8. doi: 10.1126/science.6251542.
5
Sequence data handling by computer.计算机对序列数据的处理
Nucleic Acids Res. 1977 Nov;4(11):4037-51. doi: 10.1093/nar/4.11.4037.
6
Computer analysis of nucleic acid regulatory sequences.核酸调控序列的计算机分析。
Proc Natl Acad Sci U S A. 1977 Oct;74(10):4401-5. doi: 10.1073/pnas.74.10.4401.

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验