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通过用与无义密码子UAG和UAA互补的三聚体替换大肠杆菌甲硫氨酸起始转运RNA(tRNAMetf)的反密码子三联体进行修饰。

Modification of the anticodon triplet of E.coli tRNAMetf by replacement with trimers complementary to non-sense codons UAG and UAA.

作者信息

Ohtsuka E, Doi T, Fukumoto R, Matsugi J, Ikehara M

出版信息

Nucleic Acids Res. 1983 Jun 25;11(12):3863-72. doi: 10.1093/nar/11.12.3863.

DOI:10.1093/nar/11.12.3863
PMID:6346266
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC326012/
Abstract

E. coli tRNAMetf was hydrolyzed with RNase A using a limited amount of the enzyme to give two half molecules lacking the anticodon trimer and 3'-terminal dimer. Chemically synthesized trimers CUAp and UUAp were joined to the 5'-half molecules by phosphorylation with polynucleotide kinase plus ATP followed by treatment with RNA ligase. These modified tRNAMetf species had anticodons complementary to the termination codons UAG and UAA. Two half fragments were joined by a similar procedure to yield a molecule lacking the anticodon trimer and the 3'-dimer. Methionine acceptor activity of these tRNA was tested under conditions in which the CAU inserted control tRNAMetf accepted methionine. It was found that all three modified molecules were not recognized by the methionyl-tRNA synthetase from E.coli. The other sixteen amino acids were not incorporated with partially purified aminoacyl-tRNA synthetases.

摘要

使用有限量的核糖核酸酶A水解大肠杆菌甲硫氨酸起始转运核糖核酸(tRNAMetf),得到两个缺少反密码子三聚体和3'-末端二聚体的半分子。通过用多核苷酸激酶加ATP进行磷酸化,然后用RNA连接酶处理,将化学合成的三聚体CUAp和UUAp连接到5'-半分子上。这些修饰的tRNAMetf物种具有与终止密码子UAG和UAA互补的反密码子。通过类似的程序将两个半片段连接起来,得到一个缺少反密码子三聚体和3'-二聚体的分子。在CAU插入的对照tRNAMetf接受甲硫氨酸的条件下,测试了这些tRNA的甲硫氨酸接受活性。发现所有三个修饰分子均未被来自大肠杆菌的甲硫氨酰-tRNA合成酶识别。其他16种氨基酸未与部分纯化的氨酰-tRNA合成酶结合。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/6181d6e2fea4/nar00357-0029-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/66ac3a8bef5c/nar00357-0027-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/4b4aab5a511b/nar00357-0027-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/af358ec91fbe/nar00357-0029-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/6181d6e2fea4/nar00357-0029-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/66ac3a8bef5c/nar00357-0027-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/4b4aab5a511b/nar00357-0027-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/af358ec91fbe/nar00357-0029-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/879a/326012/6181d6e2fea4/nar00357-0029-b.jpg

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引用本文的文献

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Replacement and insertion of nucleotides at the anticodon loop of E. coli tRNAMetf by ligation of chemically synthesized ribooligonucleotides.通过化学合成的核糖寡核苷酸连接来替换和插入大肠杆菌甲硫氨酸起始转运核糖核酸(tRNAMetf)反密码子环处的核苷酸。
Nucleic Acids Res. 1985 May 24;13(10):3685-97. doi: 10.1093/nar/13.10.3685.
2
Recognition of bases in Escherichia coli tRNA(Gln) by glutaminyl-tRNA synthetase: a complete identity set.
EMBO J. 1992 Nov;11(11):4159-65. doi: 10.1002/j.1460-2075.1992.tb05509.x.

本文引用的文献

1
Enzymatic replacement of the anticodon of yeast phenylalanine transfer ribonucleic acid.酵母苯丙氨酸转移核糖核酸反密码子的酶促置换
Biochemistry. 1982 Mar 2;21(5):855-61. doi: 10.1021/bi00534a007.
2
Total synthesis of a RNA molecule with sequence identical to that of Escherichia coli formylmethionine tRNA.全合成一个序列与大肠杆菌甲酰甲硫氨酸转运核糖核酸相同的核糖核酸分子。
Proc Natl Acad Sci U S A. 1981 Sep;78(9):5493-7. doi: 10.1073/pnas.78.9.5493.
3
Studies on transfer ribonucleic acids and related compounds. XLV. Block condensation of ribooligonucleotides containing 2'-O-tetrahydrofuranyl-5'-O-dimethoxytritylnucleosides.
转移核糖核酸及相关化合物的研究。XLV。含2'-O-四氢呋喃基-5'-O-二甲氧基三苯甲基核苷的核糖寡核苷酸的阻断缩合反应。
Nucleic Acids Res. 1983 Mar 11;11(5):1325-35. doi: 10.1093/nar/11.5.1325.
4
Specific interaction of anticodon loop residues with yeast phenylalanyl-tRNA synthetase.反密码子环残基与酵母苯丙氨酰 - tRNA合成酶的特异性相互作用。
Biochemistry. 1982 Aug 17;21(17):3921-6. doi: 10.1021/bi00260a003.
5
Base substitutions in the wobble position of the anticodon inhibit aminoacylation of E. coli tRNAfMet by E. coli Met-tRNA synthetase.反密码子摆动位置的碱基替换会抑制大肠杆菌甲硫氨酰 - tRNA合成酶对大肠杆菌起始tRNAfMet的氨酰化作用。
Nucleic Acids Res. 1983 Mar 11;11(5):1439-55. doi: 10.1093/nar/11.5.1439.
6
E. coli initiator tRNA analogs with different nucleotides in the discriminator base position.在鉴别碱基位置具有不同核苷酸的大肠杆菌起始tRNA类似物。
Nucleic Acids Res. 1982 Oct 25;10(20):6531-9. doi: 10.1093/nar/10.20.6531.
7
Synthesis of 5' fragments of formylmethionine transfer ribonucleic acid and their reconstitution with a natural three-quarter molecule.
Eur J Biochem. 1980 Apr;105(3):481-7. doi: 10.1111/j.1432-1033.1980.tb04523.x.
8
Purification of methionine-, valine-, phenylalanine- and tyrosine-specific tRNA from Escherichia coli.从大肠杆菌中纯化甲硫氨酸、缬氨酸、苯丙氨酸和酪氨酸特异性转运核糖核酸
Biochim Biophys Acta. 1967 Jun 20;142(1):133-48. doi: 10.1016/0005-2787(67)90522-9.
9
Loss of methionine acceptor activity resulting from a base change in the anticodon of Escherichia coli formylmethionine transfer ribonucleic acid.由于大肠杆菌甲酰甲硫氨酸转移核糖核酸反密码子中的碱基变化导致甲硫氨酸受体活性丧失。
J Biol Chem. 1973 Feb 25;248(4):1341-5.
10
Specific cleavage of tRNA by nuclease S1.核酸酶S1对转运RNA的特异性切割
Nucleic Acids Res. 1975 Jun;2(6):865-71. doi: 10.1093/nar/2.6.865.