密码子偏好性图：蛋白质编码序列的图形分析及基因表达预测
The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.
作者信息
Gribskov M, Devereux J, Burgess R R
出版信息
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):539-49. doi: 10.1093/nar/12.1part2.539.
Abstract
The codon preference plot is useful for locating genes in sequenced DNA, predicting the relative level of their expression and for detecting DNA sequencing errors resulting in the insertion or deletion of bases within a coding sequence. The three possible reading frames are displayed in parallel along with the open reading frames and plots of the location of rare codons in each reading frame.
摘要
密码子偏好性图对于在已测序的DNA中定位基因、预测其表达的相对水平以及检测导致编码序列内碱基插入或缺失的DNA测序错误很有用。三个可能的阅读框与开放阅读框以及每个阅读框中稀有密码子位置的图谱并行显示。
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本文引用的文献
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Codon catalog usage is a genome strategy modulated for gene expressivity.密码子编目使用是一种为基因表达性而调节的基因组策略。
Nucleic Acids Res. 1981 Jan 10;9(1):r43-74. doi: 10.1093/nar/9.1.213-b.
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Codon preference and its use in identifying protein coding regions in long DNA sequences.密码子偏好性及其在长DNA序列中识别蛋白质编码区的应用。
Nucleic Acids Res. 1982 Jan 11;10(1):141-56. doi: 10.1093/nar/10.1.141.
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Key for protein coding sequences identification: computer analysis of codon strategy.蛋白质编码序列识别的关键：密码子策略的计算机分析
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Codon selection in yeast.酵母中的密码子选择
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Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification.从嘌呤/嘧啶基因组序列确定蛋白质阅读框的方法及其可能的进化依据。
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Codon usage in bacteria: correlation with gene expressivity.细菌中的密码子使用：与基因表达能力的相关性
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Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.原核基因中的密码子偏好使用：最佳密码子 - 反密码子相互作用能量与高效表达基因中的选择性密码子使用
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Sequences of the Escherichia coli dnaG primase gene and regulation of its expression.大肠杆菌dnaG引发酶基因序列及其表达调控。
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