蛋白质编码对DNA序列的影响的测量及其在寻找基因中的应用。
Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes.
作者信息
Staden R
出版信息
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):551-67. doi: 10.1093/nar/12.1part2.551.
Abstract
Protein genes can be found either by searching the DNA sequence for signals such as ribosome binding sites or by looking for the effects that coding for a protein has on the coding sequence. This paper describes how these coding effects can be measured and used to detect protein coding regions.
摘要
蛋白质基因既可以通过在DNA序列中搜索诸如核糖体结合位点等信号来找到，也可以通过寻找编码蛋白质对编码序列产生的影响来找到。本文描述了如何测量这些编码效应并将其用于检测蛋白质编码区域。
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本文引用的文献
1
Recognition of protein coding regions in DNA sequences.DNA序列中蛋白质编码区域的识别。
Nucleic Acids Res. 1982 Sep 11;10(17):5303-18. doi: 10.1093/nar/10.17.5303.
2
Codon preference and its use in identifying protein coding regions in long DNA sequences.密码子偏好性及其在长DNA序列中识别蛋白质编码区的应用。
Nucleic Acids Res. 1982 Jan 11;10(1):141-56. doi: 10.1093/nar/10.1.141.
3
The atp operon: nucleotide sequence of the genes for the gamma, beta, and epsilon subunits of Escherichia coli ATP synthase.ATP操纵子：大肠杆菌ATP合酶γ、β和ε亚基基因的核苷酸序列。
Nucleic Acids Res. 1981 Oct 24;9(20):5287-96. doi: 10.1093/nar/9.20.5287.
4
Molecular analysis of the unc-54 myosin heavy-chain gene of Caenorhabditis elegans.秀丽隐杆线虫unc-54肌球蛋白重链基因的分子分析。
Nature. 1981 Jun 4;291(5814):386-90. doi: 10.1038/291386a0.
5
Nucleotide sequence of the gene ompA coding the outer membrane protein II of Escherichia coli K-12.编码大肠杆菌K-12外膜蛋白II的ompA基因的核苷酸序列。
Nucleic Acids Res. 1980 Jul 11;8(13):3011-27. doi: 10.1093/nar/8.13.3011.
6
Nucleotide sequence of bacteriophage lambda DNA.噬菌体λDNA的核苷酸序列。
J Mol Biol. 1982 Dec 25;162(4):729-73. doi: 10.1016/0022-2836(82)90546-0.
7
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J Mol Biol. 1981 Sep 25;151(3):389-409. doi: 10.1016/0022-2836(81)90003-6.
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