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准回文DNA序列参与移码突变的模型。

Model for the participation of quasi-palindromic DNA sequences in frameshift mutation.

作者信息

Ripley L S

出版信息

Proc Natl Acad Sci U S A. 1982 Jul;79(13):4128-32. doi: 10.1073/pnas.79.13.4128.

DOI:10.1073/pnas.79.13.4128
PMID:7051004
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC346590/
Abstract

A model is described for the templated production of frameshift and base-substitution mutations mediated through aberrant DNA structures arising as a consequence of quasi-palindromic DNA sequences. Two general mechanisms are considered. One evokes the formation and processing of imperfect DNA secondary structures (hairpins) for the production of mutations. The other evokes a "strand switch" during DNA synthesis which, in a manner unique to quasi-palindromic sequences, may be resolved to produce frameshift or base-substitution mutations, or both. It is the unique combination of symmetrical and asymmetrical elements of the quasi-palindromic sequence itself that provides the basis for both models. Through the mechanisms described, the symmetrical elements permit unusually paired DNA substrates, and the asymmetrical elements permit templated insertions, deletions, and base substitutions. The model predicts a class of mutations--simultaneously frameshifts and base substitutions--whose sequences can be predicted from a local quasi-palindromic sequence. This prediction appears to be met by a significant fraction (more than 15%) of frameshift mutations in the iso-1-cytochrome c gene of Saccharomyces cerevisiae.

摘要

本文描述了一种模型,用于通过准回文DNA序列产生的异常DNA结构介导的移码突变和碱基替换突变的模板化产生。考虑了两种一般机制。一种机制引发不完美DNA二级结构(发夹)的形成和加工以产生突变。另一种机制引发DNA合成过程中的“链切换”,以准回文序列特有的方式,可解析产生移码突变或碱基替换突变,或两者皆有。正是准回文序列本身的对称和不对称元件的独特组合为这两种模型提供了基础。通过所描述的机制,对称元件允许异常配对的DNA底物,不对称元件允许模板化的插入、缺失和碱基替换。该模型预测了一类突变——同时发生移码突变和碱基替换——其序列可从局部准回文序列预测。酿酒酵母异-1-细胞色素c基因中相当一部分(超过15%)的移码突变似乎符合这一预测。

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本文引用的文献

1
ENZYMIC SYNTHESIS OF DEOXYRIBONUCLEIC ACID. XX. ELECTRON MICROSCOPY OF PRODUCTS PRIMED BY NATIVE TEMPLATES.脱氧核糖核酸的酶促合成。XX。天然模板引发产物的电子显微镜观察
J Mol Biol. 1965 Feb;11:285-92. doi: 10.1016/s0022-2836(65)80058-4.
2
Cruciform structures in supercoiled DNA.超螺旋DNA中的十字形结构。
Nature. 1981 Feb 5;289(5797):466-70. doi: 10.1038/289466a0.
3
Mutational specificity of UV light in Escherichia coli: indications for a role of DNA secondary structure.紫外线在大肠杆菌中的突变特异性:DNA二级结构作用的迹象
Proc Natl Acad Sci U S A. 1982 Jul;79(13):4123-7. doi: 10.1073/pnas.79.13.4123.
4
Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system.利用纯化的T4噬菌体复制系统对双链DNA模板进行高效体外复制。
J Biol Chem. 1980 May 10;255(9):4290-3.
5
Escherichia coli mutator mutants deficient in methylation-instructed DNA mismatch correction.缺乏甲基化指导的DNA错配修复的大肠杆菌突变体
Proc Natl Acad Sci U S A. 1980 Feb;77(2):1063-7. doi: 10.1073/pnas.77.2.1063.
6
rII cistrons of bacteriophage T4. DNA sequence around the intercistronic divide and positions of genetic landmarks.噬菌体T4的rII顺反子。顺反子间分隔区周围的DNA序列及遗传标记的位置。
J Mol Biol. 1981 Jul 5;149(3):337-76. doi: 10.1016/0022-2836(81)90477-0.
7
The inverted repeat as a recognizable structural feature in supercoiled DNA molecules.反向重复序列作为超螺旋DNA分子中一种可识别的结构特征。
Proc Natl Acad Sci U S A. 1980 Nov;77(11):6468-72. doi: 10.1073/pnas.77.11.6468.
8
Chemical carcinogens as frameshift mutagens: Salmonella DNA sequence sensitive to mutagenesis by polycyclic carcinogens.作为移码诱变剂的化学致癌物:对多环致癌物诱变敏感的沙门氏菌DNA序列
Proc Natl Acad Sci U S A. 1974 May;71(5):1612-7. doi: 10.1073/pnas.71.5.1612.
9
A mechanism for initiation of genetic recombination.一种基因重组起始的机制。
Proc Natl Acad Sci U S A. 1975 Sep;72(9):3619-22. doi: 10.1073/pnas.72.9.3619.
10
Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli.乳糖阻遏物的遗传学研究。VII. 大肠杆菌lacI基因中自发热点的分子本质
J Mol Biol. 1978 Dec 25;126(4):847-57. doi: 10.1016/0022-2836(78)90023-2.