• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用邻近规则对折叠途径的理论预测及其在牛胰蛋白酶抑制剂中的应用。

Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor.

作者信息

Camacho C J, Thirumalai D

机构信息

Institute for Physical Science and Technology, University of Maryland, College Park 20742.

出版信息

Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1277-81. doi: 10.1073/pnas.92.5.1277.

DOI:10.1073/pnas.92.5.1277
PMID:7533290
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC42502/
Abstract

We propose a phenomenological theory that accounts for entropic effects due to loop formation to predict pathways in the kinetics of protein folding. The theory, the basis of which lies in multiple folding pathways and a three-stage kinetics, qualitatively reproduces most of the kinetic measurements in the refolding of bovine pancreatic trypsin inhibitor. The resulting pathways show that nonnative kinetic transients are involved in the productive routes leading to the formation of native intermediates. Our theory emphasizes the importance of the random origin of chain folding initiation structures in directing protein folding.

摘要

我们提出了一种现象学理论,该理论考虑了由于环形成而产生的熵效应,以预测蛋白质折叠动力学中的途径。该理论基于多种折叠途径和三阶段动力学,定性地再现了牛胰蛋白酶抑制剂重折叠过程中的大多数动力学测量结果。所得途径表明,非天然动力学瞬态参与了导致天然中间体形成的生产途径。我们的理论强调了链折叠起始结构的随机起源在指导蛋白质折叠中的重要性。

相似文献

1
Theoretical predictions of folding pathways by using the proximity rule, with applications to bovine pancreatic trypsin inhibitor.利用邻近规则对折叠途径的理论预测及其在牛胰蛋白酶抑制剂中的应用。
Proc Natl Acad Sci U S A. 1995 Feb 28;92(5):1277-81. doi: 10.1073/pnas.92.5.1277.
2
Kinetic role of nonnative species in the folding of bovine pancreatic trypsin inhibitor.
Proc Natl Acad Sci U S A. 1992 Oct 15;89(20):9900-4. doi: 10.1073/pnas.89.20.9900.
3
Refolding of bovine pancreatic trypsin inhibitor via non-native disulphide intermediates.通过非天然二硫键中间体对牛胰蛋白酶抑制剂进行重折叠。
J Mol Biol. 1995 Jun 2;249(2):463-77. doi: 10.1006/jmbi.1995.0309.
4
Amino acid replacement that eliminates kinetic traps in the folding pathway of pancreatic trypsin inhibitor.消除胰腺胰蛋白酶抑制剂折叠途径中动力学陷阱的氨基酸置换。
Biochemistry. 1993 Dec 28;32(51):14075-81. doi: 10.1021/bi00214a001.
5
A third native one-disulphide intermediate in the folding of bovine pancreatic trypsin inhibitor.
Nat Struct Biol. 1995 Aug;2(8):674-9. doi: 10.1038/nsb0895-674.
6
Unfolding and refolding of the native structure of bovine pancreatic trypsin inhibitor studied by computer simulations.通过计算机模拟研究牛胰蛋白酶抑制剂天然结构的展开与重折叠
Biochemistry. 1993 Sep 21;32(37):9614-31. doi: 10.1021/bi00088a014.
7
Native-like interactions favored in the unfolded bovine pancreatic trypsin inhibitor have different roles in folding.在未折叠的牛胰蛋白酶抑制剂中受到青睐的类似天然的相互作用在折叠过程中具有不同的作用。
Biochemistry. 2002 Feb 19;41(7):2246-53. doi: 10.1021/bi0116947.
8
Distinct folding pathways of two homologous disulfide proteins: bovine pancreatic trypsin inhibitor and tick anticoagulant peptide.两种同源二硫键蛋白质的不同折叠途径:牛胰蛋白酶抑制剂和蜱抗凝肽。
Antioxid Redox Signal. 2011 Jan 1;14(1):127-35. doi: 10.1089/ars.2010.3634. Epub 2010 Nov 5.
9
Kinetic roles and conformational properties of the non-native two-disulphide intermediates in the refolding of bovine pancreatic trypsin inhibitor.牛胰蛋白酶抑制剂重折叠过程中非天然二硫键中间体的动力学作用及构象性质
J Mol Biol. 1992 Apr 20;224(4):905-11. doi: 10.1016/0022-2836(92)90458-v.
10
Phi-values for BPTI folding intermediates and implications for transition state analysis.抑肽酶折叠中间体的Phi值及其对过渡态分析的意义。
Nat Struct Biol. 2001 Apr;8(4):326-30. doi: 10.1038/86200.

引用本文的文献

1
Inferring Pathways of Oxidative Folding from Prefolding Free Energy Landscapes of Disulfide-Rich Toxins.从富含二硫键的毒素的预折叠自由能景观推断氧化折叠途径。
J Phys Chem B. 2023 Mar 2;127(8):1689-1703. doi: 10.1021/acs.jpcb.2c07124. Epub 2023 Feb 15.
2
Dissecting Multiple Pathways in the Relaxation Dynamics of Helix <==> Coil Transitions with Optimum Dimensionality Reduction.用最优维度约简解析螺旋 <==> 线圈转变弛豫动力学中的多种途径。
Biomolecules. 2021 Sep 12;11(9):1351. doi: 10.3390/biom11091351.
3
Modern Kinetics and Mechanism of Protein Folding: A Retrospective.现代蛋白质折叠动力学和机制:回顾。
J Phys Chem B. 2021 Apr 15;125(14):3452-3467. doi: 10.1021/acs.jpcb.1c00206. Epub 2021 Mar 16.
4
N-Terminal Decarboxylation as a Probe for Intramolecular Contact Formation in γ-Glu-(Pro)-Met Peptides.N-端脱羧作用作为γ-谷氨酰-(脯氨酸)-甲硫氨酸肽分子内接触形成的探针。
J Phys Chem B. 2020 Sep 17;124(37):8082-8098. doi: 10.1021/acs.jpcb.0c04371. Epub 2020 Sep 2.
5
Conformational heterogeneity in human interphase chromosome organization reconciles the FISH and Hi-C paradox.人类间期染色体构象异质性协调 FISH 和 Hi-C 悖论。
Nat Commun. 2019 Aug 29;10(1):3894. doi: 10.1038/s41467-019-11897-0.
6
Accessibility explains preferred thiol-disulfide isomerization in a protein domain.可及性解释了蛋白质结构域中优先的巯基-二硫键异构化。
Sci Rep. 2017 Aug 29;7(1):9858. doi: 10.1038/s41598-017-07501-4.
7
Native, sequential protein folding via anchored N and C protein termini.通过固定的蛋白质N端和C端进行天然的、连续的蛋白质折叠。
Proc Natl Acad Sci U S A. 2016 Jun 7;113(23):E3189-91. doi: 10.1073/pnas.1602454113. Epub 2016 May 25.
8
Protein folding guides disulfide bond formation.蛋白质折叠引导二硫键形成。
Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11241-6. doi: 10.1073/pnas.1503909112. Epub 2015 Aug 21.
9
Unfolding thermodynamics of cysteine-rich proteins and molecular thermal-adaptation of marine ciliates.富含半胱氨酸蛋白的展开热力学和海洋纤毛虫的分子热适应。
Biomolecules. 2013 Nov 18;3(4):967-85. doi: 10.3390/biom3040967.
10
Förster resonance energy transfer as a probe of membrane protein folding.Förster共振能量转移作为膜蛋白折叠的一种探测方法。
Biochim Biophys Acta. 2012 Feb;1818(2):154-61. doi: 10.1016/j.bbamem.2011.08.029. Epub 2011 Sep 7.

本文引用的文献

1
Response.回应。
Science. 1992 Apr 3;256(5053):112-4. doi: 10.1126/science.256.5053.112.
2
Minimum energy compact structures of random sequences of heteropolymers.杂聚物随机序列的最小能量紧密结构。
Phys Rev Lett. 1993 Oct 11;71(15):2505-2508. doi: 10.1103/PhysRevLett.71.2505.
3
Kinetics and thermodynamics of folding in model proteins.模型蛋白折叠的动力学与热力学
Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):6369-72. doi: 10.1073/pnas.90.13.6369.
4
Fast events in protein folding initiated by nanosecond laser photolysis.由纳秒激光光解引发的蛋白质折叠中的快速事件。
Proc Natl Acad Sci U S A. 1993 Dec 15;90(24):11860-4. doi: 10.1073/pnas.90.24.11860.
5
Dissecting the disulphide-coupled folding pathway of bovine pancreatic trypsin inhibitor. Forming the first disulphide bonds in analogues of the reduced protein.剖析牛胰蛋白酶抑制剂的二硫键偶联折叠途径。在还原蛋白类似物中形成首个二硫键。
J Mol Biol. 1993 Aug 5;232(3):873-96. doi: 10.1006/jmbi.1993.1437.
6
Amino acid replacement that eliminates kinetic traps in the folding pathway of pancreatic trypsin inhibitor.消除胰腺胰蛋白酶抑制剂折叠途径中动力学陷阱的氨基酸置换。
Biochemistry. 1993 Dec 28;32(51):14075-81. doi: 10.1021/bi00214a001.
7
Kinetic role of a meta-stable native-like two-disulphide species in the folding transition of bovine pancreatic trypsin inhibitor.亚稳态天然样双二硫键物种在牛胰蛋白酶抑制剂折叠转变中的动力学作用
J Mol Biol. 1984 Nov 5;179(3):497-526. doi: 10.1016/0022-2836(84)90077-9.
8
Kinetic analysis of the folding and unfolding of a mutant form of bovine pancreatic trypsin inhibitor lacking the cysteine-14 and -38 thiols.缺乏半胱氨酸-14和-38巯基的牛胰蛋白酶抑制剂突变体形式折叠与去折叠的动力学分析。
Biochemistry. 1988 Apr 5;27(7):2481-9. doi: 10.1021/bi00407a034.
9
Mutants of bovine pancreatic trypsin inhibitor lacking cysteines 14 and 38 can fold properly.缺乏半胱氨酸14和38的牛胰蛋白酶抑制剂突变体能够正确折叠。
Science. 1987 Mar 13;235(4794):1370-3. doi: 10.1126/science.2435002.
10
Reexamination of the folding of BPTI: predominance of native intermediates.对抑肽酶折叠的重新审视:天然中间体的优势。
Science. 1991 Sep 20;253(5026):1386-93. doi: 10.1126/science.1716783.