Nucleotide sequence analysis of the M genomic segment of El Moro Canyon hantavirus: antigenic distinction from four corners hantavirus.

El Moro Canyon hantavirus (ELMC, previously known as HMV-1) is associated with the western harvest mouse Reithrodontomys megalotis. The interpretation that ELMC is a novel hantavirus was based upon comparisons of the nucleotide sequence of the S genomic segment with those of other hantaviruses. We now show that the ELMC M genome, like the S genome, is genetically similar to but distinct from that of Four Corners hantavirus (FC). The ELMC M genome is 3801 nt in length and encodes a glycoprotein precursor of 1139 amino acids. The G1 and G2 genes are 71 and 73.1% identical to those of FC and the corresponding glycoproteins are 73.5 and 82.3% identical. A portion of the G1 glycoprotein of ELMC that is homologous to an important linear epitope of FC differs from the FC epitope by 10 of 31 residues. That domain and flanking sequences were expressed in Escherichia coli. G1 antibodies from 3 of 19 FC-infected patients showed cross-reactivity with ELMC by Western blot assay. The portion of the ELMC G1 antigen recognized by those antibodies is the region of homology to the FC epitope. These data support our previous interpretation that ELMC is distinct from FC and other hantaviruses.