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大肠杆菌核糖核酸酶P切割位点选择的决定因素:详细的体外和体内分析

Determinants of Escherichia coli RNase P cleavage site selection: a detailed in vitro and in vivo analysis.

作者信息

Svärd S G, Kirsebom L A

机构信息

Department of Microbiology, Biomedical Center, Uppsala, Sweden.

出版信息

Nucleic Acids Res. 1993 Feb 11;21(3):427-34. doi: 10.1093/nar/21.3.427.

DOI:10.1093/nar/21.3.427
PMID:7680119
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC309135/
Abstract

The location of the Escherichia coli RNase P cleavage site was studied both in vitro and in vivo. We show that selection of the cleavage site is dependent on the nucleotide at the cleavage site and the length of the acceptor-stem. Within the acceptor-stem the number of nucleotides on the 5'-half of the acceptor-stem appears to be the important determinant, rather than the number of base pairs in the acceptor-stem. We also demonstrate that the length of the T-stem and a G to C substitution at position 57 in the tRNA(Tyr)Su3 precursor influence the location of the cleavage site under certain conditions. With respect to the function of the subunits of RNase P our data suggest that the nucleotide at position 333 in M1 RNA, and the C5 protein, are important for the identification of the cleavage site.

摘要

我们在体外和体内研究了大肠杆菌核糖核酸酶P切割位点的位置。我们发现,切割位点的选择取决于切割位点处的核苷酸以及受体茎的长度。在受体茎内,受体茎5'-半部分的核苷酸数量似乎是重要的决定因素,而不是受体茎中的碱基对数量。我们还证明,在某些条件下,T茎的长度以及tRNA(Tyr)Su3前体中第57位的G到C替换会影响切割位点的位置。关于核糖核酸酶P亚基的功能,我们的数据表明,M1 RNA中第333位的核苷酸以及C5蛋白对于识别切割位点很重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/36e7499ddffd/nar00052-0080-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/b82cbf52f9b7/nar00052-0077-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/47e99b0d0b1b/nar00052-0077-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/42415d059b91/nar00052-0078-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/36e7499ddffd/nar00052-0080-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/b82cbf52f9b7/nar00052-0077-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/47e99b0d0b1b/nar00052-0077-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/42415d059b91/nar00052-0078-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ed4/309135/36e7499ddffd/nar00052-0080-a.jpg

相似文献

1
Determinants of Escherichia coli RNase P cleavage site selection: a detailed in vitro and in vivo analysis.大肠杆菌核糖核酸酶P切割位点选择的决定因素:详细的体外和体内分析
Nucleic Acids Res. 1993 Feb 11;21(3):427-34. doi: 10.1093/nar/21.3.427.
2
Several regions of a tRNA precursor determine the Escherichia coli RNase P cleavage site.tRNA前体的几个区域决定了大肠杆菌核糖核酸酶P的切割位点。
J Mol Biol. 1992 Oct 20;227(4):1019-31. doi: 10.1016/0022-2836(92)90518-o.
3
The kinetics and specificity of cleavage by RNase P is mainly dependent on the structure of the amino acid acceptor stem.核糖核酸酶P切割的动力学和特异性主要取决于氨基酸接受茎的结构。
Nucleic Acids Res. 1992 Feb 11;20(3):425-32. doi: 10.1093/nar/20.3.425.
4
Identification of a region within M1 RNA of Escherichia coli RNase P important for the location of the cleavage site on a wild-type tRNA precursor.鉴定大肠杆菌核糖核酸酶P的M1 RNA中一个对野生型tRNA前体切割位点定位很重要的区域。
J Mol Biol. 1993 Jun 5;231(3):594-604. doi: 10.1006/jmbi.1993.1312.
5
Interaction between Escherichia coli RNase P RNA and the discriminator base results in slow product release.大肠杆菌核糖核酸酶P RNA与识别碱基之间的相互作用导致产物释放缓慢。
RNA. 1996 Apr;2(4):299-307.
6
Product release is a rate-limiting step during cleavage by the catalytic RNA subunit of Escherichia coli RNase P.在大肠杆菌核糖核酸酶P的催化RNA亚基进行切割的过程中,产物释放是一个限速步骤。
Nucleic Acids Res. 1993 Jan 11;21(1):51-7. doi: 10.1093/nar/21.1.51.
7
Analysis of the functional role of conserved residues in the protein subunit of ribonuclease P from Escherichia coli.大肠杆菌核糖核酸酶P蛋白亚基中保守残基的功能作用分析。
J Mol Biol. 1997 Apr 11;267(4):818-29. doi: 10.1006/jmbi.1997.0906.
8
Effects of C5 protein on Escherichia coli RNase P catalysis with a precursor tRNA(Phe) bearing a single mismatch in the acceptor stem.C5蛋白对带有位于受体茎的单个错配的前体tRNA(苯丙氨酸)的大肠杆菌核糖核酸酶P催化作用的影响。
Biochem Biophys Res Commun. 2000 Feb 5;268(1):136-40. doi: 10.1006/bbrc.2000.2095.
9
Sequence changes in both flanking sequences of a pre-tRNA influence the cleavage specificity of RNase P.前体tRNA两侧序列的变化会影响核糖核酸酶P的切割特异性。
J Mol Biol. 1991 Feb 20;217(4):637-48. doi: 10.1016/0022-2836(91)90522-8.
10
Cleavage efficiencies of model substrates for ribonuclease P from Escherichia coli and Thermus thermophilus.来自大肠杆菌和嗜热栖热菌的核糖核酸酶P的模型底物的切割效率。
Nucleic Acids Res. 1992 Nov 25;20(22):5963-70. doi: 10.1093/nar/20.22.5963.

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本文引用的文献

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme.核糖核酸酶P的RNA部分是该酶的催化亚基。
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Nucleotide sequence of the gene encoding the RNA subunit (M1 RNA) of ribonuclease P from Escherichia coli.编码来自大肠杆菌的核糖核酸酶P的RNA亚基(M1 RNA)的基因的核苷酸序列。
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Cross talk between the +73/294 interaction and the cleavage site in RNase P RNA mediated cleavage.RNase P RNA介导的切割中+73/294相互作用与切割位点之间的串扰。
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Substrate binding and catalysis by ribonuclease P from cyanobacteria and Escherichia coli are affected differently by the 3' terminal CCA in tRNA precursors.来自蓝细菌和大肠杆菌的核糖核酸酶P对底物的结合及催化作用,受tRNA前体中3'末端CCA的影响各异。
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Mutations which alter the elbow region of tRNA2Gly reduce T4 gene 60 translational bypassing efficiency.改变tRNA2Gly肘部区域的突变会降低T4基因60的翻译跳跃效率。
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Novel reactions of RNAase P with a tRNA-like structure in turnip yellow mosaic virus RNA.核糖核酸酶P与芜菁黄花叶病毒RNA中类似tRNA结构的新反应。
Cell. 1988 Apr 22;53(2):267-72. doi: 10.1016/0092-8674(88)90388-1.
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Processing of histidine transfer RNA precursors. Abnormal cleavage site for RNase P.组氨酸转运RNA前体的加工。核糖核酸酶P的异常切割位点。
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The recognition by RNase P of precursor tRNAs.核糖核酸酶P对前体转运核糖核酸的识别。
J Biol Chem. 1988 Feb 15;263(5):2344-51.
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Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme.核糖核酸酶P(一种核糖核蛋白酶)的蛋白质部分的作用。
Science. 1988 Jan 8;239(4836):178-81. doi: 10.1126/science.3122322.
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A single mutation in loop IV of Escherichia coli SuIII tRNA blocks processing at both 5'- and 3'-ends of the precursor tRNA.
J Biol Chem. 1986 Feb 25;261(6):2928-35.
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Site selection by Xenopus laevis RNAase P.非洲爪蟾核糖核酸酶P的位点选择
Cell. 1989 Jul 14;58(1):37-45. doi: 10.1016/0092-8674(89)90400-5.