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The gene family encoding the Arabidopsis thaliana translation elongation factor EF-1 alpha: molecular cloning, characterization and expression.编码拟南芥翻译延伸因子EF-1α的基因家族:分子克隆、特性及表达
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Molecular cloning of the high affinity calcium-binding protein (calreticulin) of skeletal muscle sarcoplasmic reticulum.骨骼肌肌浆网高亲和力钙结合蛋白(钙网蛋白)的分子克隆
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通过单次部分测序生成甘蓝型油菜随机根cDNA克隆的表达序列标签

Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing.

作者信息

Park Y S, Kwak J M, Kwon O Y, Kim Y S, Lee D S, Cho M J, Lee H H, Nam H G

机构信息

Department of Life Sciences, Pohang Institute of Science and Technology, Kyungbuk, South Korea.

出版信息

Plant Physiol. 1993 Oct;103(2):359-70. doi: 10.1104/pp.103.2.359.

DOI:10.1104/pp.103.2.359
PMID:8029332
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC158991/
Abstract

Two hundred thirty-seven expressed sequence tags (ESTs) of Brassica napus were generated by single-run partial sequencing of 197 random root cDNA clones. A computer search of these root ESTs revealed that 21 ESTs show significant similarity to the protein-coding sequences in the existing data bases, including five stress- or defense-related genes and four clones related to the genes from other kingdoms. Northern blot analysis of the 10 data base-matched cDNA clones revealed that many of the clones are expressed most abundantly in root but less abundantly in other organs. However, two clones were highly root specific. The results show that generation of the root ESTs by partial sequencing of random cDNA clones along with the expression analysis is an efficient approach to isolate genes that are functional in plant root in a large scale. We also discuss the results of the examination of cDNA libraries and sequencing methods suitable for this approach.

摘要

通过对197个随机根cDNA克隆进行单次部分测序,获得了237个甘蓝型油菜的表达序列标签(EST)。对这些根EST进行计算机搜索发现,21个EST与现有数据库中的蛋白质编码序列具有显著相似性,其中包括5个与胁迫或防御相关的基因以及4个与其他生物界基因相关的克隆。对10个与数据库匹配的cDNA克隆进行Northern印迹分析表明,许多克隆在根中表达最为丰富,而在其他器官中表达较少。然而,有两个克隆具有高度的根特异性。结果表明,通过对随机cDNA克隆进行部分测序以及表达分析来生成根EST,是大规模分离在植物根中起作用的基因的有效方法。我们还讨论了cDNA文库检查结果以及适用于该方法的测序方法。