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对酵母X染色体左臂上一段40.7 kb片段的序列分析揭示了14个已知基因和13个新的开放阅读框,其中包括聚集在XI染色体右臂上的基因的同源物。

Sequence analysis of a 40.7 kb segment from the left arm of yeast chromosome X reveals 14 known genes and 13 new open reading frames including homologues of genes clustered on the right arm of chromosome XI.

作者信息

Katsoulou C, Tzermia M, Tavernarakis N, Alexandraki D

机构信息

Foundation for Research and Technology-HELLAS, Institute of Molecular Biology and Biotechnology, Crete, Greece.

出版信息

Yeast. 1996 Jun 30;12(8):787-97. doi: 10.1002/(SICI)1097-0061(19960630)12:8%3C787::AID-YEA954%3E3.0.CO;2-4.

Abstract

The complete nucleotide sequence of a 40.7 kb segment about 130 kb from the left end of chromosome X of Saccharomyces cerevisiae was determined from two overlapping cosmids. Computer analysis of that sequence revealed the presence of the previously known genes VPS35, INO1, SnR128, SnR190, MP12, YAK1, RPB4, YUR1, TIF2, MRS3 and URA2, three previously sequenced open reading frames (ORFs) of unknown function 5' of the INO1, 5' of the MP12 and 3' of the URA2 genes and 13 newly identified ORFs. One of the new ORFs is homologous to mammalian glycogenin glycosyltransferases and another has similarities to the human phospholipase D. Some others contain potential transmembrane regions or leucine zipper motifs. The existence of yeast expressed sequence tags for some of the newly identified ORFs indicates that they are transcribed. A cluster of six genes within 10 kb (YUR1, TIF2, two new ORFs, an RSP25 homologue and MRS3) have homologues arranged similarly within 28.5 kb on the right arm of chromosome XI.

摘要

从两个重叠的黏粒中确定了酿酒酵母X染色体左端约130 kb处一段40.7 kb片段的完整核苷酸序列。对该序列的计算机分析揭示了先前已知的基因VPS35、INO1、SnR128、SnR190、MP12、YAK1、RPB4、YUR1、TIF2、MRS3和URA2的存在,INO1基因5'端、MP12基因5'端和URA2基因3'端有三个先前已测序但功能未知的开放阅读框(ORF)以及13个新鉴定的ORF。其中一个新的ORF与哺乳动物糖原合酶糖基转移酶同源,另一个与人类磷脂酶D相似。其他一些含有潜在的跨膜区域或亮氨酸拉链基序。一些新鉴定的ORF存在酵母表达序列标签,表明它们被转录。在10 kb范围内的六个基因簇(YUR1、TIF2、两个新的ORF、一个RSP25同源物和MRS3)在XI号染色体右臂上28.5 kb范围内有类似排列的同源物。

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