Camacho C J, Thirumalai D
Facultad de Fisica, Pontifica Universidad Catolica de Chile, Santiago, Chile.
Protein Sci. 1996 Sep;5(9):1826-32. doi: 10.1002/pro.5560050908.
We present a lattice Monte Carlo study to examine the effect of denaturants on the folding rates of simplified models of proteins. The two-dimensional model is made from a three-letter code mimicking the presence of hydrophobic, hydrophilic, and cysteine residues. We show that the rate of folding is maximum when the effective hydrophobic interaction epsilon H is approximately equal to the free energy gain epsilon S upon forming disulfide bonds. In the range 1 < or = epsilon H/ epsilon S < or = 3, multiple paths that connect several intermediates to the native state lead to fast folding. It is shown that at a fixed temperature and epsilon S the folding rate increases as epsilon H decreases. An approximate model is used to show that epsilon H should decrease as a function of the concentration of denaturants such as urea or guanidine hydrochloride. Our simulation results, in conjunction with this model, are used to show that increasing the concentration of denaturants can lead to an increase in folding rates. This occurs because denaturants can destabilize the intermediates without significantly altering the energy of the native conformation. Our findings are compared with experiments on the effects of denaturants on the refolding of bovine pancreatic trypsin inhibitor and ribonuclease T1. We also argue that the phenomenon of denaturant-enhanced folding of proteins should be general.
我们开展了一项晶格蒙特卡罗研究,以考察变性剂对简化蛋白质模型折叠速率的影响。二维模型由模仿疏水、亲水和半胱氨酸残基存在的三字母编码构成。我们发现,当有效疏水相互作用εH近似等于形成二硫键时的自由能增益εS时,折叠速率最大。在1≤εH/εS≤3的范围内,连接多个中间体与天然态的多条路径导致快速折叠。结果表明,在固定温度和εS下,折叠速率随εH的减小而增加。使用一个近似模型表明,εH应作为尿素或盐酸胍等变性剂浓度的函数而减小。我们的模拟结果与该模型相结合,用于表明增加变性剂浓度可导致折叠速率增加。出现这种情况是因为变性剂可使中间体不稳定,而不会显著改变天然构象的能量。我们将研究结果与变性剂对牛胰蛋白酶抑制剂和核糖核酸酶T1重折叠影响的实验进行了比较。我们还认为,变性剂增强蛋白质折叠的现象应该是普遍存在的。