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催化在转运RNA反密码子中形成肌苷34的酵母酶的作用机制、特异性及一般特性。

Mechanism, specificity and general properties of the yeast enzyme catalysing the formation of inosine 34 in the anticodon of transfer RNA.

作者信息

Auxilien S, Crain P F, Trewyn R W, Grosjean H

机构信息

Laboratoire d'Enzymologie et Biochimie Structurales du CNRS, Gif-sur-Yvette, France.

出版信息

J Mol Biol. 1996 Oct 4;262(4):437-58. doi: 10.1006/jmbi.1996.0527.

Abstract

In yeast, inosine is found at the first position of the anticodon (position 34) of seven different isoacceptor tRNA species, while in Escherichia coli it is present only in tRNAArg. The corresponding tRNA genes all have adenosine at position 34. Using as substrates in vitro T7-runoff transcripts of 31 plasmids carrying each natural of synthetic tRNA gene harbouring an anticodon with adenosine 34, we have characterised a yeast enzyme that catalyses the conversion of adenosine 34 to inosine 34. The homologous E. coli enzyme modifies adenosine 34 only in tRNAs with an arginine anticodon ACG. The base conversion occurs by a hydrolytic deamination-type reaction. This was determined by reversed phase high-pressure liquid chromatography/electrospray mass spectrometry analysis of the reaction product after in vitro modification in [18O]water. This newly characterised tRNA:adenosine 34 deaminase was partially purified from yeast. It has a molecular mass of approximately 75 kDa, and it does not require any cofactor, except magnesium ions, to deaminate adenosine 34 efficiently in tRNA. The observed dependence of the enzymatic reaction on magnesium ions probably reflects the need for a correct tRNA architecture. Enzymatic recognition of tRNA does not depend on the presence of any "identify" nucleoside other than adenosine 34. Likewise, the presence of pseudouridine 32 or 1-methyl-guanosine 37 in the anticodon loop does not interfere with inosine 34 biosynthesis. However, the efficacy of adenosine 34 to inosine 34 conversion depends on the nucleotide sequence of the anticodon loop and its proximal stem, the best tRNA substrates being those with a purine at position 35. Mutations that affect the size of the anticodon loop or one of several three-dimensional base-pairs abolish the capacity of the tRNA to be substrate for the yeast tRNA:adenosine 34 deaminase. Evidently, the activity of yeast tRNA:adenosine 34 deaminase depends more on the global structural feature (conformational stability/flexibility) of the L-shaped tRNA substrates than on the identity of any particular nucleotide other than adenosine 34. An apparent K(m) of 2.3 nM for its natural substrate tRNASer (anticodon AGA) was measured. Altogether, these results suggest that a single enzyme can account for the presence of inosine 34 in all seven cytoplasmic A34-containing precursor tRNAs in yeast.

摘要

在酵母中,七种不同的同工受体tRNA物种的反密码子第一位(第34位)存在肌苷,而在大肠杆菌中,它仅存在于tRNAArg中。相应的tRNA基因在第34位均为腺苷。我们使用31个携带天然或合成tRNA基因的质粒的T7体外转录本作为底物,这些tRNA基因的反密码子第34位为腺苷,从而鉴定出一种酵母酶,它能催化腺苷34向肌苷34的转化。同源的大肠杆菌酶仅修饰反密码子为ACG的精氨酸tRNA中的腺苷34。碱基转化通过水解脱氨基类型的反应发生。这是通过在[18O]水中进行体外修饰后,对反应产物进行反相高压液相色谱/电喷雾质谱分析确定的。这种新鉴定的tRNA:腺苷34脱氨酶是从酵母中部分纯化得到的。它的分子量约为75 kDa,除镁离子外,高效催化tRNA中腺苷34脱氨基不需要任何辅因子。观察到的酶促反应对镁离子的依赖性可能反映了对正确tRNA结构的需求。tRNA的酶促识别不依赖于除腺苷34以外的任何“识别”核苷的存在。同样,反密码子环中假尿苷32或1 - 甲基鸟苷37的存在也不干扰肌苷34的生物合成。然而,腺苷34向肌苷34转化的效率取决于反密码子环及其近端茎的核苷酸序列,最佳的tRNA底物是第35位为嘌呤的那些。影响反密码子环大小或几个三维碱基对之一的突变会消除tRNA作为酵母tRNA:腺苷34脱氨酶底物的能力。显然,酵母tRNA:腺苷34脱氨酶的活性更多地取决于L形tRNA底物的整体结构特征(构象稳定性/灵活性),而不是除腺苷34以外的任何特定核苷酸的身份。测得其天然底物tRNASer(反密码子AGA)的表观K(m)为2.3 nM。总之,这些结果表明,一种单一的酶可以解释酵母中所有七种含A34的细胞质前体tRNA中肌苷34的存在。

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