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解淀粉芽孢杆菌的修订描述以及伊利诺伊芽孢杆菌新种和知本芽孢杆菌新种的描述

Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov.

作者信息

Shida O, Takagi H, Kadowaki K, Nakamura L K, Komagata K

机构信息

Research Laboratory, Higeta Shoyu Co., Ltd, Chiba, Japan.

出版信息

Int J Syst Bacteriol. 1997 Apr;47(2):299-306. doi: 10.1099/00207713-47-2-299.

Abstract

The taxonomic position of unidentified group 6 of Bacillus circulans as described by Nakamura and Swezey (L.K. Nakamura and J. Swezey, Int. J. Syst. Bacteriol. 33:46-52, 1983) was determined, and the taxonomy of Paenibacillus amylolyticus was reexamined. The results of PCR amplification of a 16S rRNA gene fragment with a specific primer and comparative analysis of 16S rRNA gene sequences warranted placing the two taxa in the genus Paenibacillus. The levels of DNA reassociation among the strains revealed four groups (designated groups I, II, III, and 6), each with a high level of intragroup relatedness (> 72%). Clustering based on phenotypic characteristics correlated well with DNA relatedness grouping. P. amylolyticus strains were scattered in groups I, II, and III. Strains labeled the type strain of P. amylolyticus from different culture collections appeared in groups I and III. Strains found in group I were identified as P. amylolyticus sensu stricto, and the one strain found in group III was identified as Paenibacillus lautus. Group 6 encompassed strains formerly assigned to B. circulans group 6, and group II contained other strains identified as P. amylolyticus. Groups 6 and II were phenotypically and genetically distinct taxa that were distinguishable from the previously described species. These findings showed that groups 6 and II were new species, for which we propose the names Paenibacillus illinoisensis and Paenibacillus chibensis, respectively.

摘要

确定了中村和斯威齐(L.K.中村和J.斯威齐,《国际系统细菌学杂志》33:46 - 52,1983年)所描述的环状芽孢杆菌未鉴定的第6组的分类地位,并重新审视了解淀粉芽孢杆菌的分类学。用特异性引物对16S rRNA基因片段进行PCR扩增以及对16S rRNA基因序列进行比较分析的结果,证明应将这两个分类单元归入类芽孢杆菌属。菌株间的DNA重结合水平显示出四个组(分别命名为I、II、III和6组),每组内的相关性都很高(> 72%)。基于表型特征的聚类与DNA相关性分组很好地相关。解淀粉芽孢杆菌菌株分散在I、II和III组中。来自不同培养物保藏中心的被标记为解淀粉芽孢杆菌模式菌株的菌株出现在I组和III组中。在I组中发现的菌株被鉴定为狭义的解淀粉芽孢杆菌,在III组中发现的一个菌株被鉴定为劳氏类芽孢杆菌。第6组包括以前归入环状芽孢杆菌第6组的菌株,II组包含其他被鉴定为解淀粉芽孢杆菌的菌株。第6组和II组是表型和遗传上不同的分类单元,与先前描述的物种有区别。这些发现表明第6组和II组是新物种,我们分别提议将其命名为伊利诺伊类芽孢杆菌和千曲类芽孢杆菌。

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