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恶臭假单胞菌乙二醛酶I的活性单体和二聚体形式:三维结构域交换的证据

Active monomeric and dimeric forms of Pseudomonas putida glyoxalase I: evidence for 3D domain swapping.

作者信息

Saint-Jean A P, Phillips K R, Creighton D J, Stone M J

机构信息

Department of Chemistry, Indiana University, Bloomington 47405-0001, USA.

出版信息

Biochemistry. 1998 Jul 21;37(29):10345-53. doi: 10.1021/bi980868q.

Abstract

3D domain swapping of proteins involves the interconversion of a monomer containing a single domain-domain interface and a 2-fold symmetrical dimer containing two equivalent intermolecular interfaces. Human glyoxalase I has the structure of a domain-swapped dimer [Cameron, A. D., Olin, B., Ridderström, M., Mannervik, B., and Jones, T. A. (1997) EMBO J. 16, 3386-3395] but Pseudomonas putida glyoxalase I has been reported to be monomeric [Rhee, H.-I., Murata, K., and Kimura, A. (1986) Biochem. Biophys. Res. Commun. 141, 993-999]. We show here that recombinant P. putida glyoxalase I is an active dimer (kcat approximately 500 +/- 100 s-1; KM approximately 0.4 +/- 0.2 mM) with two zinc ions per dimer. The zinc is required for structure and function. However, treatment of the dimer with glutathione yields an active monomer (kcat approximately 115 +/- 40 s-1; KM approximately 1.4 +/- 0.4 mM) containing a single zinc ion. The monomer is metastable and slowly reverts to the active dimer in the absence of glutathione. Thus, glyoxalase I appears to be a novel example of a single protein able to exist in two alternative domain-swapped forms. It is unique among domain-swapped proteins in that the active site and an essential metal binding site are apparently disassembled and reassembled by the process of domain swapping. Furthermore, it is the only example to date in which 3D domain swapping can be regulated by a small organic ligand.

摘要

蛋白质的三维结构域交换涉及到含有单个结构域 - 结构域界面的单体与含有两个等效分子间界面的二倍体对称二聚体之间的相互转化。人乙二醛酶I具有结构域交换二聚体的结构[卡梅伦,A.D.,奥林,B.,里德斯特伦,M.,曼内维克,B.,和琼斯,T.A.(1997年)《欧洲分子生物学组织杂志》16,3386 - 3395],但据报道恶臭假单胞菌乙二醛酶I是单体[李,H.-I.,村田,K.,和木村,A.(1986年)《生物化学与生物物理研究通讯》141,993 - 999]。我们在此表明,重组恶臭假单胞菌乙二醛酶I是一种活性二聚体(催化常数约为500±100 s⁻¹;米氏常数约为0.4±0.2 mM),每个二聚体含有两个锌离子。锌对于结构和功能是必需的。然而,用谷胱甘肽处理二聚体可产生含有单个锌离子的活性单体(催化常数约为115±40 s⁻¹;米氏常数约为1.4±0.4 mM)。该单体是亚稳态的,在没有谷胱甘肽的情况下会缓慢恢复为活性二聚体。因此,乙二醛酶I似乎是一种能够以两种不同的结构域交换形式存在的单一蛋白质的新例子。它在结构域交换蛋白质中是独特的,因为活性位点和一个必需的金属结合位点显然通过结构域交换过程被拆解和重新组装。此外,它是迄今为止唯一的一个三维结构域交换可由一种小有机配体调节的例子。

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