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Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations.利用编码小亚基rRNA序列的基因对交替单胞菌属、希瓦氏菌属和莫氏杆菌属进行系统发育分析,将交替单胞菌属分为两个属,即交替单胞菌属(修订)和新拟交替单胞菌属,并提出十二个新的物种组合。
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Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments.硫微螺菌属物种的系统发育关系及其在深海热液喷口样品中通过16S rDNA片段变性梯度凝胶电泳进行的鉴定。
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Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences.基于小亚基rRNA序列对弧菌属、发光杆菌属、气单胞菌属和邻单胞菌属的系统发育分析与评估。
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北海的噬菌体多样性。

Bacteriophage diversity in the North Sea.

作者信息

Wichels A, Biel S S, Gelderblom H R, Brinkhoff T, Muyzer G, Schütt C

机构信息

Biologische Anstalt Helgoland, D-27498 Helgoland, Germany.

出版信息

Appl Environ Microbiol. 1998 Nov;64(11):4128-33. doi: 10.1128/AEM.64.11.4128-4133.1998.

DOI:10.1128/AEM.64.11.4128-4133.1998
PMID:9797256
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC106618/
Abstract

In recent years interest in bacteriophages in aquatic environments has increased. Electron microscopy studies have revealed high numbers of phage particles (10(4) to 10(7) particles per ml) in the marine environment. However, the ecological role of these bacteriophages is still unknown, and the role of the phages in the control of bacterioplankton by lysis and the potential for gene transfer are disputed. Even the basic questions of the genetic relationships of the phages and the diversity of phage-host systems in aquatic environments have not been answered. We investigated the diversity of 22 phage-host systems after 85 phages were collected at one station near a German island, Helgoland, located in the North Sea. The relationships among the phages were determined by electron microscopy, DNA-DNA hybridization, and host range studies. On the basis of morphology, 11 phages were assigned to the virus family Myoviridae, 7 phages were assigned to the family Siphoviridae, and 4 phages were assigned to the family Podoviridae. DNA-DNA hybridization confirmed that there was no DNA homology between phages belonging to different families. We found that the 22 marine bacteriophages belonged to 13 different species. The host bacteria were differentiated by morphological and physiological tests and by 16S ribosomal DNA sequencing. All of the bacteria were gram negative, facultatively anaerobic, motile, and coccoid. The 16S rRNA sequences of the bacteria exhibited high levels of similarity (98 to 99%) with the sequences of organisms belonging to the genus Pseudoalteromonas, which belongs to the gamma subdivision of the class Proteobacteria.

摘要

近年来,人们对水生环境中噬菌体的兴趣有所增加。电子显微镜研究表明,海洋环境中存在大量噬菌体颗粒(每毫升10⁴至10⁷个颗粒)。然而,这些噬菌体的生态作用仍然未知,噬菌体通过裂解控制浮游细菌的作用以及基因转移的潜力也存在争议。甚至噬菌体的遗传关系以及水生环境中噬菌体 - 宿主系统的多样性等基本问题都尚未得到解答。我们在北海德国黑尔戈兰岛附近的一个站点收集了85种噬菌体后,研究了22个噬菌体 - 宿主系统的多样性。通过电子显微镜、DNA - DNA杂交和宿主范围研究确定了噬菌体之间的关系。根据形态学,11种噬菌体被归类为肌尾噬菌体科,7种噬菌体被归类为长尾噬菌体科,4种噬菌体被归类为短尾噬菌体科。DNA - DNA杂交证实,属于不同科的噬菌体之间不存在DNA同源性。我们发现这22种海洋噬菌体属于13个不同的物种。通过形态学和生理学测试以及16S核糖体DNA测序对宿主细菌进行了区分。所有细菌均为革兰氏阴性、兼性厌氧、可运动且呈球状。这些细菌的16S rRNA序列与属于变形菌门γ亚纲的假交替单胞菌属生物的序列具有高度相似性(98%至99%)。