Hlavacek W S, Posner R G, Perelson A S
Theoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA.
Biophys J. 1999 Jun;76(6):3031-43. doi: 10.1016/S0006-3495(99)77456-4.
Steric effects can influence the binding of a cell surface receptor to a multivalent ligand. To account for steric effects arising from the size of a receptor and from the spacing of binding sites on a ligand, we extend a standard mathematical model for ligand-receptor interactions by introducing a steric hindrance factor. This factor gives the fraction of unbound ligand sites that are accessible to receptors, and thus available for binding, as a function of ligand site occupancy. We derive expressions for the steric hindrance factor for various cases in which the receptor covers a compact region on the ligand surface and the ligand expresses sites that are distributed regularly or randomly in one or two dimensions. These expressions are relevant for ligands such as linear polymers, proteins, and viruses. We also present numerical algorithms that can be used to calculate steric hindrance factors for other cases. These theoretical results allow us to quantify the effects of steric hindrance on ligand-receptor kinetics and equilibria.
空间效应会影响细胞表面受体与多价配体的结合。为了考虑受体大小以及配体上结合位点间距所产生的空间效应,我们通过引入空间位阻因子来扩展配体 - 受体相互作用的标准数学模型。该因子给出了未结合配体位点中可被受体接近从而可用于结合的部分,它是配体位点占有率的函数。我们推导了各种情况下的空间位阻因子表达式,其中受体覆盖配体表面的一个紧凑区域,且配体上的位点在一维或二维上呈规则或随机分布。这些表达式适用于线性聚合物、蛋白质和病毒等配体。我们还给出了可用于计算其他情况空间位阻因子的数值算法。这些理论结果使我们能够量化空间位阻对配体 - 受体动力学和平衡的影响。