Akasaka K, Li H, Yamada H, Li R, Thoresen T, Woodward C K
Department of Molecular Science, The Graduate School of Science and Technology, Kobe University, Japan.
Protein Sci. 1999 Oct;8(10):1946-53. doi: 10.1110/ps.8.10.1946.
The effect of pressure on amide 15N chemical shifts was studied in uniformly 15N-labeled basic pancreatic trypsin inhibitor (BPTI) in 90%1H2O/10%2H2O, pH 4.6, by 1H-15N heteronuclear correlation spectroscopy between 1 and 2,000 bar. Most 15N signals were low field shifted linearly and reversibly with pressure (0.468 +/- 0.285 ppm/2 kbar), indicating that the entire polypeptide backbone structure is sensitive to pressure. A significant variation of shifts among different amide groups (0-1.5 ppm/2 kbar) indicates a heterogeneous response throughout within the three-dimensional structure of the protein. A tendency toward low field shifts is correlated with a decrease in hydrogen bond distance on the order of 0.03 A/2 kbar for the bond between the amide nitrogen atom and the oxygen atom of either carbonyl or water. The variation of 15N shifts is considered to reflect site-specific changes in phi, psi angles. For beta-sheet residues, a decrease in psi angles by 1-2 degrees/2 kbar is estimated. On average, shifts are larger for helical and loop regions (0.553 +/- 0.343 and 0.519 +/- 0.261 ppm/2 kbar, respectively) than for beta-sheet (0.295 +/- 0.195 ppm/2 kbar), suggesting that the pressure-induced structural changes (local compressibilities) are larger in helical and loop regions than in beta-sheet. Because compressibility is correlated with volume fluctuation, the result is taken to indicate that the volume fluctuation is larger in helical and loop regions than in beta-sheet. An important aspect of the volume fluctuation inferred from pressure shifts is that they include motions in slower time ranges (less than milliseconds) in which many biological processes may take place.
通过在1至2000巴压力下的1H-15N异核相关光谱,研究了压力对90%1H2O/10%2H2O、pH 4.6条件下均匀15N标记的碱性胰蛋白酶抑制剂(BPTI)中酰胺15N化学位移的影响。大多数15N信号随压力线性且可逆地向低场移动(0.468±0.285 ppm/2千巴),表明整个多肽主链结构对压力敏感。不同酰胺基团之间的位移有显著变化(0 - 1.5 ppm/2千巴),表明蛋白质三维结构内存在异质响应。向低场移动的趋势与酰胺氮原子与羰基或水的氧原子之间的氢键距离以约0.03 Å/2千巴的量级减小相关。15N位移的变化被认为反映了phi、psi角的位点特异性变化。对于β-折叠残基,估计psi角每2千巴减小1 - 2度。平均而言,螺旋和环区域的位移(分别为0.553±0.343和0.519±0.261 ppm/2千巴)比β-折叠区域(0.295±0.195 ppm/2千巴)更大,这表明螺旋和环区域中压力诱导的结构变化(局部压缩性)比β-折叠区域更大。由于压缩性与体积波动相关,该结果表明螺旋和环区域的体积波动比β-折叠区域更大。从压力位移推断出的体积波动的一个重要方面是,它们包括许多生物过程可能发生的较慢时间范围(小于毫秒)内的运动。