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结构、能量景观、动力学和别构在肌红蛋白酶功能中的作用。

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin.

作者信息

Frauenfelder H, McMahon B H, Austin R H, Chu K, Groves J T

机构信息

Center for Nonlinear Studies, MS-B 258, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.

出版信息

Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2370-4. doi: 10.1073/pnas.041614298. Epub 2001 Feb 20.

DOI:10.1073/pnas.041614298
PMID:11226246
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC30145/
Abstract

The grail of protein science is the connection between structure and function. For myoglobin (Mb) this goal is close. Described as only a passive dioxygen storage protein in texts, we argue here that Mb is actually an allosteric enzyme that can catalyze reactions among small molecules. Studies of the structural, spectroscopic, and kinetic properties of Mb lead to a model that relates structure, energy landscape, dynamics, and function. Mb functions as a miniature chemical reactor, concentrating and orienting diatomic molecules such as NO, CO, O(2), and H(2)O(2) in highly conserved internal cavities. Reactions can be controlled because Mb exists in distinct taxonomic substates with different catalytic properties and connectivities of internal cavities.

摘要

蛋白质科学的圣杯是结构与功能之间的联系。对于肌红蛋白(Mb)而言,这一目标已近在咫尺。在教科书中,Mb仅被描述为一种被动的双氧气储存蛋白,但我们在此认为,Mb实际上是一种能催化小分子间反应的别构酶。对Mb的结构、光谱和动力学性质的研究得出了一个将结构、能量景观、动力学和功能联系起来的模型。Mb起着微型化学反应器的作用,在高度保守的内部腔室中浓缩并定向诸如NO、CO、O₂和H₂O₂等双原子分子。反应能够得到控制,因为Mb以具有不同催化特性和内部腔室连通性的不同分类亚状态存在。

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本文引用的文献

1
Nitric Oxide: A Unique Endogenous Signaling Molecule in Vascular Biology (Nobel Lecture).一氧化氮:血管生物学中独特的内源性信号分子(诺贝尔演讲)
Angew Chem Int Ed Engl. 1999 Jul 12;38(13-14):1882-1892. doi: 10.1002/(SICI)1521-3773(19990712)38:13/14<1882::AID-ANIE1882>3.0.CO;2-V.
2
Discovery of Some of the Biological Effects of Nitric Oxide and Its Role in Cell Signaling (Nobel Lecture).一氧化氮的一些生物学效应的发现及其在细胞信号传导中的作用(诺贝尔演讲)
Angew Chem Int Ed Engl. 1999 Jul 12;38(13-14):1856-1868. doi: 10.1002/(SICI)1521-3773(19990712)38:13/14<1856::AID-ANIE1856>3.0.CO;2-D.
3
Endothelium-Derived Relaxing Factor: Discovery, Early Studies, and Identifcation as Nitric Oxide (Nobel Lecture).内皮衍生舒张因子:发现、早期研究及一氧化氮的鉴定(诺贝尔演讲)
Angew Chem Int Ed Engl. 1999 Jul 12;38(13-14):1870-1880. doi: 10.1002/(SICI)1521-3773(19990712)38:13/14<1870::AID-ANIE1870>3.0.CO;2-8.
4
A vertebrate globin expressed in the brain.一种在大脑中表达的脊椎动物珠蛋白。
Nature. 2000 Sep 28;407(6803):520-3. doi: 10.1038/35035093.
5
Life without myoglobin.没有肌红蛋白的生命。
Cell Mol Life Sci. 2000 Jun;57(6):896-8. doi: 10.1007/PL00000732.
6
Nitric-oxide dioxygenase activity and function of flavohemoglobins. sensitivity to nitric oxide and carbon monoxide inhibition.黄素血红蛋白的一氧化氮双加氧酶活性与功能。对一氧化氮和一氧化碳抑制的敏感性。
J Biol Chem. 2000 Oct 13;275(41):31581-7. doi: 10.1074/jbc.M004141200.
7
Ligand binding and conformational motions in myoglobin.肌红蛋白中的配体结合与构象运动
Nature. 2000 Mar 9;404(6774):205-8. doi: 10.1038/35004622.
8
Structure of a ligand-binding intermediate in wild-type carbonmonoxy myoglobin.野生型一氧化碳肌红蛋白中配体结合中间体的结构
Nature. 2000 Feb 24;403(6772):921-3. doi: 10.1038/35002641.
9
Inactivation of creatine kinase induced by dopa and dopamine in the presence of ferrylmyoglobin.在高铁肌红蛋白存在的情况下,多巴和多巴胺诱导肌酸激酶失活。
Chem Biol Interact. 1999 Nov 15;123(1):51-61. doi: 10.1016/s0009-2797(99)00124-6.
10
Disruption of myoglobin in mice induces multiple compensatory mechanisms.小鼠中肌红蛋白的破坏会引发多种代偿机制。
Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10495-500. doi: 10.1073/pnas.96.18.10495.