Breitbart Mya, Salamon Peter, Andresen Bjarne, Mahaffy Joseph M, Segall Anca M, Mead David, Azam Farooq, Rohwer Forest
Department of Biology, San Diego State University, San Diego, CA 92182-4614, USA.
Proc Natl Acad Sci U S A. 2002 Oct 29;99(22):14250-5. doi: 10.1073/pnas.202488399. Epub 2002 Oct 16.
Viruses are the most common biological entities in the oceans by an order of magnitude. However, very little is known about their diversity. Here we report a genomic analysis of two uncultured marine viral communities. Over 65% of the sequences were not significantly similar to previously reported sequences, suggesting that much of the diversity is previously uncharacterized. The most common significant hits among the known sequences were to viruses. The viral hits included sequences from all of the major families of dsDNA tailed phages, as well as some algal viruses. Several independent mathematical models based on the observed number of contigs predicted that the most abundant viral genome comprised 2-3% of the total population in both communities, which was estimated to contain between 374 and 7,114 viral types. Overall, diversity of the viral communities was extremely high. The results also showed that it would be possible to sequence the entire genome of an uncultured marine viral community.
病毒是海洋中数量最为庞大的生物实体,数量级远超其他生物。然而,我们对其多样性却知之甚少。在此,我们报告了对两个未培养的海洋病毒群落的基因组分析。超过65%的序列与先前报道的序列无显著相似性,这表明许多病毒的多样性此前未被描述。在已知序列中,最常见的显著匹配对象是病毒。病毒匹配序列包括来自双链DNA尾噬菌体所有主要科的序列,以及一些藻类病毒。基于观察到的重叠群数量的几个独立数学模型预测,在这两个群落中,最丰富的病毒基因组占总群体的2% - 3%,据估计这两个群落共包含374至7114种病毒类型。总体而言,病毒群落的多样性极高。结果还表明,对未培养的海洋病毒群落进行全基因组测序是可行的。