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莱氏新松叶蜂核多角体病毒基因组的序列与组织

Sequence and organization of the Neodiprion lecontei nucleopolyhedrovirus genome.

作者信息

Lauzon Hilary A M, Lucarotti Christopher J, Krell Peter J, Feng Qili, Retnakaran Arthur, Arif Basil M

机构信息

Canadian Forest Service, Great Lakes Forestry Centre, Sault Ste. Marie, Ontario, Canada P6A 2E5.

出版信息

J Virol. 2004 Jul;78(13):7023-35. doi: 10.1128/JVI.78.13.7023-7035.2004.

Abstract

All fully sequenced baculovirus genomes, with the exception of the dipteran Culex nigripalpus nucleopolyhedrovirus (CuniNPV), have previously been from Lepidoptera. This study reports the sequencing and characterization of a hymenopteran baculovirus, Neodiprion lecontei nucleopolyhedrovirus (NeleNPV), from the redheaded pine sawfly. NeleNPV has the smallest genome so far published (81,755 bp) and has a GC content of only 33.3%. It contains 89 potential open reading frames, 43 with baculovirus homologues, 6 identified by conserved domains, and 1 with homology to a densovirus structural protein. Average amino acid identity of homologues ranged from 19.7% with CuniNPV to 24.9% with Spodoptera exigua nucleopolyhedrovirus. The conserved set of baculovirus genes has dropped to 29, since NeleNPV lacks an F protein homologue (ac23/ld130). NeleNPV contains 12 conserved lepidopteran baculovirus genes, including that for DNA binding protein, late expression factor 11 (lef-11), polyhedrin, occlusion derived virus envelope protein-18 (odv-e18), p40, and p45, but lacks 21 others, including lef-3, me53, immediate early gene-1, lef-6, pp31, odv-e66, few polyhedra 25k, odv-e25, protein kinase-1, fibroblast growth factor, and ubiquitin. The lack of identified baculovirus homologues may be due to difficulties in identification, differences in host-virus interactions, or other genes performing similar functions. Gene parity plots showed limited colinearity of NeleNPV with other baculoviruses, and phylogenetic analysis indicates that NeleNPV may have existed before the lepidopteran nucleopolyhedrovirus and granulovirus divergence. The creation of two new Baculoviridae genera to fit hymenopteran and dipteran baculoviruses may be necessary.

摘要

除双翅目的致倦库蚊核型多角体病毒(CuniNPV)外,此前所有已完成全序列测定的杆状病毒基因组均来自鳞翅目。本研究报告了一种来自红头松叶蜂的膜翅目杆状病毒——黑松叶蜂核型多角体病毒(NeleNPV)的测序及特征分析。NeleNPV拥有迄今已发表的最小基因组(81,755碱基对),其GC含量仅为33.3%。它包含89个潜在的开放阅读框,其中43个与杆状病毒具有同源性,6个通过保守结构域鉴定,1个与浓核病毒结构蛋白具有同源性。同源物的平均氨基酸同一性范围从与CuniNPV的19.7%到与甜菜夜蛾核型多角体病毒的24.9%。由于NeleNPV缺乏F蛋白同源物(ac23/ld130),杆状病毒的保守基因集已降至29个。NeleNPV包含12个保守的鳞翅目杆状病毒基因,包括DNA结合蛋白、晚期表达因子11(lef - 11)、多角体蛋白、包埋衍生病毒包膜蛋白 - 18(odv - e18)、p40和p45,但缺少其他21个基因,包括lef - 3、me53、立即早期基因 - 1、lef - 6、pp31、odv - e66、少多角体25k、odv - e25、蛋白激酶 - 1、成纤维细胞生长因子和泛素。未鉴定出杆状病毒同源物可能是由于鉴定困难、宿主 - 病毒相互作用的差异或其他执行类似功能的基因所致。基因一致性图显示NeleNPV与其他杆状病毒的共线性有限,系统发育分析表明NeleNPV可能在鳞翅目核型多角体病毒和颗粒体病毒分化之前就已存在。可能有必要创建两个新的杆状病毒科属来容纳膜翅目和双翅目杆状病毒。

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