Xiao Huazhong, Qi Yipeng
Institute of Virology, Wuhan University, Wuhan 430072, PR China.
Virus Genes. 2007 Dec;35(3):845-56. doi: 10.1007/s11262-007-0106-z. Epub 2007 Sep 1.
The nucleotide sequence of the Leucania seperata (Ls) Nucleopolyhedrovirus (LsNPV) genome has been determined and analyzed. The circular dsDNA genome contains 168041 bp, making it the largest NPV sequenced to date. The genome has a G + C content of 48.6% and encodes 169 predicted open reading frames (ORFs), one unique repeat region, and eight homologous repeat regions that are divided into two groups. Of the genome, 82.8% encodes predicted ORFs including five dispersal ORFs that have a large overlaps (range in 149 approximately 390 bp) with their adjacent ORFs, respectively such as expression factor 10, 11, 5, 2 (lef-10, lef-11, lef-5, lef-2), and telokin-like protein-20 (tlp-20); 4.4% is in repeat regions; the remaining 12.8% of the genome comprises nonrepeat intergenic regions. LsNPV encodes homologues of 133 ORFs identified previously in other baculoviruses. Other than 10 'baculovirus repeat ORFs' (bro) and two 'inhibitor of apoptosis' (iap) genes, no duplicated ORFs were found. LsNPV lacks a homologue of the ubiquitin gene, which has been found in all fully sequenced baculoviruses. Iap3 and p49, two genes were proven to be inhibitors of apoptosis by experiment, and are found in the LsNPV genome. It is not found in other baculoviruses that two kinds of inhibitors of apoptosis present in a baculovirus genome.
已测定并分析了粘虫核型多角体病毒(LsNPV)基因组的核苷酸序列。环状双链DNA基因组包含168041 bp,是迄今为止测序的最大的NPV。该基因组的G + C含量为48.6%,编码169个预测的开放阅读框(ORF)、一个独特的重复区域和八个同源重复区域,这些重复区域分为两组。基因组中,82.8%编码预测的ORF,其中包括五个分散的ORF,它们分别与其相邻的ORF有较大重叠(范围在149至39o bp),如表达因子10、11、5、2(lef-10、lef-11、lef-5、lef-2)和类端激酶蛋白-20(tlp-20);4.4%位于重复区域;基因组其余12.8%由非重复基因间隔区组成。LsNPV编码先前在其他杆状病毒中鉴定出的133个ORF的同源物。除了10个“杆状病毒重复ORF”(bro)和两个“凋亡抑制因子”(iap)基因外,未发现重复的ORF。LsNPV缺乏泛素基因的同源物,而在所有已完全测序的杆状病毒中都发现了泛素基因。Iap3和p49这两个基因经实验证明是凋亡抑制因子,在LsNPV基因组中被发现。在其他杆状病毒基因组中未发现存在两种凋亡抑制因子的情况。