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DIALIGN:在BiBiServ上进行多DNA和蛋白质序列比对

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.

作者信息

Morgenstern Burkhard

机构信息

University of Göttingen, Institute of Microbiology and Genetics, Goldschmidtstr. 1, 37077 Göttingen, Germany.

出版信息

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W33-6. doi: 10.1093/nar/gkh373.

DOI:10.1093/nar/gkh373
PMID:15215344
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC441511/
Abstract

DIALIGN is a widely used software tool for multiple DNA and protein sequence alignment. The program combines local and global alignment features and can therefore be applied to sequence data that cannot be correctly aligned by more traditional approaches. DIALIGN is available online through Bielefeld Bioinformatics Server (BiBiServ). The downloadable version of the program offers several new program features. To compare the output of different alignment programs, we developed the program AltAVisT. Our software is available at http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/.

摘要

DIALIGN是一种广泛用于多DNA和蛋白质序列比对的软件工具。该程序结合了局部和全局比对功能,因此可应用于传统方法无法正确比对的序列数据。可通过比勒费尔德生物信息学服务器(BiBiServ)在线获取DIALIGN。该程序的可下载版本提供了几个新的程序功能。为了比较不同比对程序的输出结果,我们开发了AltAVisT程序。我们的软件可在http://bibiserv.TechFak.Uni-Bielefeld.DE/dialign/获取。

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本文引用的文献

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The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.用于基因组序列多重比对的CHAOS/DIALIGN万维网服务器。
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W41-4. doi: 10.1093/nar/gkh361.
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Exon discovery by genomic sequence alignment.通过基因组序列比对发现外显子。
Bioinformatics. 2002 Jun;18(6):777-87. doi: 10.1093/bioinformatics/18.6.777.
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Recent progress in multiple sequence alignment: a survey.多重序列比对的最新进展:一项综述。
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Multiple sequence alignment using partial order graphs.使用偏序图的多序列比对。
Bioinformatics. 2002 Mar;18(3):452-64. doi: 10.1093/bioinformatics/18.3.452.