Ensing Bernd, Klein Michael L
Center for Molecular Modeling and Department of Chemistry, 231 South 34th Street, University of Pennsylvania, Philadelphia, PA 19104-6323, USA.
Proc Natl Acad Sci U S A. 2005 May 10;102(19):6755-9. doi: 10.1073/pnas.0408094102. Epub 2005 Apr 29.
Recently, we computed the 3D free energy surface of the base-induced elimination reaction between F(-) and CH(3)CH(2)F by using a powerful technique within Car-Parrinello molecular dynamics simulation. Here, the set of three order parameters is expanded to six, which allows the study of the competing elimination and substitution reactions simultaneously. The power of the method is exemplified by the exploration of the six-dimensional free energy landscape, sampling, and mapping out the eight stable states as well as the connecting bottlenecks. The free energy profile and barrier along the E2 and S(N)2 reaction channels are refined by using umbrella sampling. The two mechanisms do not share a common "E2C-like" transition state. Comparison with the zero temperature profiles shows a particularly significant entropy contribution to the S(N)2 channel.
最近,我们通过在Car-Parrinello分子动力学模拟中使用一种强大的技术,计算了F(-)与CH(3)CH(2)F之间碱诱导消除反应的三维自由能表面。在这里,三个序参量集扩展到六个,这使得能够同时研究竞争的消除和取代反应。通过探索六维自由能景观、采样以及描绘出八个稳定状态和连接瓶颈,例证了该方法的强大之处。沿着E2和S(N)2反应通道的自由能分布和势垒通过使用伞形采样进行了细化。这两种机制不共享一个共同的“类E2C”过渡态。与零温度分布的比较表明,熵对S(N)2通道有特别显著的贡献。