Suppr超能文献

真核生物趋化作用中的扩散限制相分离

Diffusion-limited phase separation in eukaryotic chemotaxis.

作者信息

Gamba Andrea, de Candia Antonio, Di Talia Stefano, Coniglio Antonio, Bussolino Federico, Serini Guido

机构信息

Department of Mathematics, Polytechnic of Turin, 10129 Turin, Italy.

出版信息

Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16927-32. doi: 10.1073/pnas.0503974102. Epub 2005 Nov 16.

Abstract

The ability of cells to sense spatial gradients of chemoattractant factors governs the development of complex eukaryotic organisms. Cells exposed to shallow chemoattractant gradients respond with strong accumulation of the enzyme phosphatidylinositol 3-kinase (PI3K) and its D3-phosphoinositide product (PIP(3)) on the plasma membrane side exposed to the highest chemoattractant concentration, whereas PIP(3)-degrading enzyme PTEN and its product PIP(2) localize in a complementary pattern. Such an early symmetry-breaking event is a mandatory step for directed cell movement elicited by chemoattractants, but its physical origin is still mysterious. Here, we propose that directional sensing is the consequence of a phase-ordering process mediated by phosphoinositide diffusion and driven by the distribution of chemotactic signal. By studying a realistic reaction-diffusion lattice model that describes PI3K and PTEN enzymatic activity, recruitment to the plasma membrane, and diffusion of their phosphoinositide products, we show that the effective enzyme-enzyme interaction induced by catalysis and diffusion introduces an instability of the system toward phase separation for realistic values of physical parameters. In this framework, large reversible amplification of shallow chemotactic gradients, selective localization of chemical factors, macroscopic response timescales, and spontaneous polarization arise naturally. The model is robust with respect to order-of-magnitude variations of the parameters.

摘要

细胞感知趋化因子空间梯度的能力决定了复杂真核生物的发育。暴露于浅趋化因子梯度下的细胞,在质膜上暴露于最高趋化因子浓度的一侧,会强烈积累磷脂酰肌醇3激酶(PI3K)及其D3 - 磷酸肌醇产物(PIP(3)),而PIP(3)降解酶PTEN及其产物PIP(2)则以互补模式定位。这种早期的对称性破缺事件是趋化因子引发的定向细胞运动的必要步骤,但其物理起源仍然神秘。在这里,我们提出方向感知是由磷酸肌醇扩散介导并由趋化信号分布驱动的相序过程的结果。通过研究一个现实的反应 - 扩散晶格模型,该模型描述了PI3K和PTEN的酶活性、向质膜的募集以及它们磷酸肌醇产物的扩散,我们表明,对于现实的物理参数值,由催化和扩散诱导的有效酶 - 酶相互作用会使系统朝着相分离产生不稳定性。在此框架下,浅趋化梯度的大幅可逆放大、化学因子的选择性定位、宏观响应时间尺度以及自发极化自然出现。该模型对于参数的数量级变化具有鲁棒性。

相似文献

1
Diffusion-limited phase separation in eukaryotic chemotaxis.
Proc Natl Acad Sci U S A. 2005 Nov 22;102(47):16927-32. doi: 10.1073/pnas.0503974102. Epub 2005 Nov 16.
2
Bidirectional molecular transport shapes cell polarization in a two-dimensional model of eukaryotic chemotaxis.
J Theor Biol. 2014 Dec 21;363:235-46. doi: 10.1016/j.jtbi.2014.08.033. Epub 2014 Aug 27.
3
A simulation environment for directional sensing as a phase separation process.
Sci STKE. 2007 Mar 20;2007(378):pl1. doi: 10.1126/stke.3782007pl1.
5
6
Spatial regulation of PI3K signaling during chemotaxis.
Wiley Interdiscip Rev Syst Biol Med. 2009 Sep-Oct;1(2):247-253. doi: 10.1002/wsbm.13.
7
PI 3-kinases and PTEN: how opposites chemoattract.
Cell. 2002 May 31;109(5):541-4. doi: 10.1016/s0092-8674(02)00765-1.
8
Chemotaxis: navigating by multiple signaling pathways.
Sci STKE. 2007 Jul 24;2007(396):pe40. doi: 10.1126/stke.3962007pe40.
9
Chemotaxis in the absence of PIP3 gradients.
Curr Biol. 2007 May 1;17(9):813-7. doi: 10.1016/j.cub.2007.04.004.
10
Temporal and spatial regulation of chemotaxis.
Dev Cell. 2002 Oct;3(4):469-78. doi: 10.1016/s1534-5807(02)00292-7.

引用本文的文献

1
Orientation of Cell Polarity by Chemical Gradients.
Annu Rev Biophys. 2022 May 9;51:431-451. doi: 10.1146/annurev-biophys-110821-071250. Epub 2022 Feb 7.
2
Physics of compartmentalization: How phase separation and signaling shape membrane and organelle identity.
Comput Struct Biotechnol J. 2021 May 24;19:3225-3233. doi: 10.1016/j.csbj.2021.05.029. eCollection 2021.
3
Kinetics of PTEN-mediated PI(3,4,5)P3 hydrolysis on solid supported membranes.
PLoS One. 2018 Feb 15;13(2):e0192667. doi: 10.1371/journal.pone.0192667. eCollection 2018.
4
Mean field analysis of a spatial stochastic model of a gene regulatory network.
J Math Biol. 2015 Oct;71(4):921-59. doi: 10.1007/s00285-014-0837-0. Epub 2014 Oct 17.
5
Cell memory and adaptation in chemotaxis.
Proc Natl Acad Sci U S A. 2014 Oct 28;111(43):15287-8. doi: 10.1073/pnas.1418077111. Epub 2014 Oct 15.
6
Modeling self-organized spatio-temporal patterns of PIP₃ and PTEN during spontaneous cell polarization.
Phys Biol. 2014 Aug;11(4):046002. doi: 10.1088/1478-3975/11/4/046002. Epub 2014 Jul 15.
7
Collective cell streams in epithelial monolayers depend on cell adhesion.
New J Phys. 2013 Jul;15. doi: 10.1088/1367-2630/15/7/075006.
9
Endothelial cell motility, coordination and pattern formation during vasculogenesis.
Wiley Interdiscip Rev Syst Biol Med. 2013 Sep-Oct;5(5):587-602. doi: 10.1002/wsbm.1233. Epub 2013 Jul 15.
10
Identifying network motifs that buffer front-to-back signaling in polarized neutrophils.
Cell Rep. 2013 May 30;3(5):1607-16. doi: 10.1016/j.celrep.2013.04.009. Epub 2013 May 9.

本文引用的文献

1
Domain shapes and patterns: the phenomenology of modulated phases.
Science. 1995 Jan 27;267(5197):476-83. doi: 10.1126/science.267.5197.476.
2
A local coupling model and compass parameter for eukaryotic chemotaxis.
Dev Cell. 2005 Feb;8(2):215-27. doi: 10.1016/j.devcel.2004.12.007.
3
Chemotaxis: signalling the way forward.
Nat Rev Mol Cell Biol. 2004 Aug;5(8):626-34. doi: 10.1038/nrm1435.
4
5
Novel mechanism of PTEN regulation by its phosphatidylinositol 4,5-bisphosphate binding motif is critical for chemotaxis.
J Biol Chem. 2004 Apr 16;279(16):16606-13. doi: 10.1074/jbc.M312098200. Epub 2004 Feb 5.
6
Cell migration: integrating signals from front to back.
Science. 2003 Dec 5;302(5651):1704-9. doi: 10.1126/science.1092053.
7
Uniform cAMP stimulation of Dictyostelium cells induces localized patches of signal transduction and pseudopodia.
Mol Biol Cell. 2003 Dec;14(12):5019-27. doi: 10.1091/mbc.e03-08-0566. Epub 2003 Oct 31.
8
Eukaryotic chemotaxis: distinctions between directional sensing and polarization.
J Biol Chem. 2003 Jun 6;278(23):20445-8. doi: 10.1074/jbc.R300010200. Epub 2003 Apr 2.
9
Phospholipids undergo hop diffusion in compartmentalized cell membrane.
J Cell Biol. 2002 Jun 10;157(6):1071-81. doi: 10.1083/jcb.200202050.
10
PIP(2) and proteins: interactions, organization, and information flow.
Annu Rev Biophys Biomol Struct. 2002;31:151-75. doi: 10.1146/annurev.biophys.31.082901.134259. Epub 2001 Oct 25.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验