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光系统II中用于水氧化的可能质子输出途径的能量学

Energetics of a possible proton exit pathway for water oxidation in photosystem II.

作者信息

Ishikita Hiroshi, Saenger Wolfram, Loll Bernhard, Biesiadka Jacek, Knapp Ernst-Walter

机构信息

Institute of Chemistry and Biochemistry, Department of Biology, Chemistry, and Pharmacy, Free University of Berlin, Takustrasse 6, D-14195 Berlin, Germany.

出版信息

Biochemistry. 2006 Feb 21;45(7):2063-71. doi: 10.1021/bi051615h.

Abstract

The crystal structure of photosystem II (PSII) at 3.0-A resolution suggests that titratable residues on the lumenal side of D1/D2 and PsbO form a polar channel, which might serve as a proton exit pathway associated with water oxidation on the Mn-cluster. With full account of protein environment, we calculated the pK(a) of these residues by solving the linearized Poisson-Boltzmann equation. Along the prospective proton channel, the calculated pK(a) of titratable residues (namely via D1-Asp61, D1-Glu65, D2-Glu312, D2-Lys317 D1-Asp59, D1-Arg64, PsbO-Arg152, and PsbO-Asp224) monotonically increase from the Mn-cluster to the lumenal bulk side. We suggest that these residues form the exit pathway guiding protons, which are released at the Mn-cluster as a product of water oxidation, in an exergonic process out of PSII. Upon the S2 to S3 transition, CP43-Arg357 showed a dramatic deprotonation of ca. one H(+), suggesting that this residue is coupled to the redox states of the Mn-cluster and the tyrosine Y(Z). The calculated pK(a) values of 4.2-4.4 for D2-Glu312 and those of approximately 8-10.9 for D1-Asp59 and D1-Arg64 are indicative of the experimentally determined pK(a) values for inhibition of S-state transitions. Upon removal of the atomic coordinates of PsbO, the pK(a) of these residues are dramatically affected, indicating a significant role of PsbO in tuning the pK(a) of those residues in the proton exit pathway.

摘要

光系统II(PSII)3.0埃分辨率的晶体结构表明,D1/D2和PsbO腔侧的可滴定残基形成了一个极性通道,该通道可能作为与锰簇上的水氧化相关的质子出口途径。在充分考虑蛋白质环境的情况下,我们通过求解线性化泊松-玻尔兹曼方程计算了这些残基的pK(a)。沿着预期的质子通道,可滴定残基(即通过D1-Asp61、D1-Glu65、D2-Glu312、D2-Lys317、D1-Asp59、D1-Arg64、PsbO-Arg152和PsbO-Asp224)的计算pK(a)从锰簇向腔侧本体单调增加。我们认为这些残基形成了引导质子的出口途径,质子作为水氧化的产物在锰簇处释放,并以放能过程从PSII中流出。在从S2到S3的转变过程中,CP43-Arg357显示出约一个H(+)的显著去质子化,表明该残基与锰簇和酪氨酸Y(Z)的氧化还原状态相关。D2-Glu312的计算pK(a)值为4.2-4.4,D1-Asp59和D1-Arg64的计算pK(a)值约为8-10.9,这与实验测定的抑制S态转变的pK(a)值一致。去除PsbO的原子坐标后,这些残基的pK(a)受到显著影响,表明PsbO在调节质子出口途径中那些残基的pK(a)方面起着重要作用。

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