de Silva Eric, Stumpf Michael P H
Division of Molecular Biosciences, Imperial Collage London, Theoretical Genomics Group, South Kensington Campus, London SW7 2AZ, UK.
J R Soc Interface. 2005 Dec 22;2(5):419-30. doi: 10.1098/rsif.2005.0067.
The analysis of molecular networks, such as transcriptional, metabolic and protein interaction networks, has progressed substantially because of the power of models from statistical physics. Increasingly, the data are becoming so detailed--though not always complete or correct--that the simple models are reaching the limits of their usefulness. Here, we will discuss how network information can be described and to some extent quantified. In particular statistics offers a range of tools, such as model selection, which have not yet been widely applied in the analysis of biological networks. We will also outline a number of present challenges posed by biological network data in systems biology, and the extent to which these can be addressed by new developments in statistics, physics and applied mathematics.
诸如转录、代谢和蛋白质相互作用网络等分子网络的分析,由于统计物理学模型的强大作用而取得了显著进展。数据越来越详细——尽管并不总是完整或正确——以至于简单模型正逐渐达到其效用的极限。在此,我们将讨论网络信息如何被描述以及在一定程度上如何被量化。特别是统计学提供了一系列工具,如模型选择,这些工具尚未在生物网络分析中得到广泛应用。我们还将概述系统生物学中生物网络数据带来的一些当前挑战,以及统计学、物理学和应用数学的新进展能够在多大程度上应对这些挑战。