人前臂浅表皮肤细菌群落的分子分析

Molecular analysis of human forearm superficial skin bacterial biota.

作者信息

Gao Zhan, Tseng Chi-hong, Pei Zhiheng, Blaser Martin J

机构信息

Department of Medicine, New York University School of Medicine, New York, NY 10016, USA.

出版信息

Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2927-32. doi: 10.1073/pnas.0607077104. Epub 2007 Feb 9.

Abstract

The microbial ecology of human skin is complex, but little is known about its species composition. We examined the diversity of the skin biota from the superficial volar left and right forearms in six healthy subjects using broad-range small subunit rRNA genes (16S rDNA) PCR-based sequencing of randomly selected clones. For the initial 1,221 clones analyzed, 182 species-level operational taxonomic units (SLOTUs) belonging to eight phyla were identified, estimated as 74.0% [95% confidence interval (C.I.), approximately 64.8-77.9%] of the SLOTUs in this ecosystem; 48.0 +/- 12.2 SLOTUs were found in each subject. Three phyla (Actinobacteria, Firmicutes, and Proteobacteria) accounted for 94.6% of the clones. Most (85.3%) of the bacterial sequences corresponded to known and cultivated species, but 98 (8.0%) clones, comprising 30 phylotypes, had <97% similarity to prior database sequences. Only 6 (6.6%) of the 91 genera and 4 (2.2%) of the 182 SLOTUs, respectively, were found in all six subjects. Analysis of 817 clones obtained 8-10 months later from four subjects showed additional phyla (numbering 2), genera (numbering 28), and SLOTUs (numbering 65). Only four (3.4%) of the 119 genera (Propionibacteria, Corynebacteria, Staphylococcus, and Streptococcus) were observed in each subject tested twice, but these genera represented 54.4% of all clones. These results show that the bacterial biota in normal superficial skin is highly diverse, with few well conserved and well represented genera, but otherwise low-level interpersonal consensus.

摘要

人类皮肤的微生物生态复杂,但对其物种组成却知之甚少。我们使用基于随机选择克隆的广域小亚基核糖体RNA基因(16S rDNA)PCR测序,检测了6名健康受试者左右前臂掌侧皮肤生物群的多样性。在最初分析的1221个克隆中,鉴定出属于8个门的182个物种水平的操作分类单元(SLOTUs),估计占该生态系统中SLOTUs的74.0%[95%置信区间(C.I.),约64.8 - 77.9%];每个受试者中发现48.0±12.2个SLOTUs。三个门(放线菌门、厚壁菌门和变形菌门)占克隆的94.6%。大多数(85.3%)细菌序列与已知和已培养物种相对应,但98个(8.0%)克隆,包括30个系统发育型,与先前数据库序列的相似度<97%。在所有6名受试者中分别仅发现91个属中的6个(6.6%)和182个SLOTUs中的4个(2.2%)。对4名受试者在8 - 10个月后获得的817个克隆进行分析,发现了另外的门(2个)、属(28个)和SLOTUs(65个)。在接受两次检测的每个受试者中仅观察到119个属中的4个(3.4%)(丙酸杆菌属、棒状杆菌属、葡萄球菌属和链球菌属),但这些属占所有克隆的54.4%。这些结果表明,正常浅表皮肤中的细菌生物群高度多样,保守且代表性强的属很少,但人际间的一致性水平较低。

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