Choo Yoe-Jin, Lee Kiyoung, Song Jaeho, Cho Jang-Cheon
Division of Biology and Ocean Sciences, Inha University, Yonghyun-Dong, Incheon 402-751, Republic of Korea.
Int J Syst Evol Microbiol. 2007 Mar;57(Pt 3):532-537. doi: 10.1099/ijs.0.64616-0.
A Gram-negative, chemoheterotrophic, facultatively anaerobic coccus, designated IMCC1545(T), was isolated from the digestive tract of a marine clamworm, Periserrula leucophryna, inhabiting a tidal flat of the Yellow Sea. Cells of strain IMCC1545(T) are non-motile, dividing by binary fission. The predominant fatty acids are anteiso-C(15 : 0) and C(18 : 0). The respiratory quinone is menaquinone-7 and the DNA G+C content is 52.1 mol%. Phylogenetic analyses based on 16S rRNA gene sequences using three treeing algorithms revealed that the strain formed a novel genus-level lineage within the phylum 'Verrucomicrobia'. The most closely related named organisms to strain IMCC1545(T) are 'Fucophilus fucoidanolyticus' SI-1234 (86.5 % 16S rRNA gene sequence similarity), Alterococcus agarolyticus ADT3(T) (81.8 %) and Opitutus terrae PB90-1(T) (80.3 %), which belong to subdivision 4 of the 'Verrucomicrobia'. Subdivision 4 of the 'Verrucomicrobia' (here named Opitutae classis nov.) was divided into two clades, a clade containing strain IMCC1545(T) and a clade containing Opitutus terrae. From the taxonomic data obtained in this study, it is proposed that the new marine isolate be placed into a novel genus and species named Puniceicoccus vermicola gen. nov., sp. nov. (the type strain of Puniceicoccus vermicola is IMCC1545(T)=KCCM 42343(T)=NBRC 101964(T)) within Puniceicoccaceae fam. nov and Puniceicoccales ord. nov in the class Opitutae. The family Opitutaceae fam. nov. and order Opitutales ord. nov. are also formally proposed.
从栖息于黄海潮间带的海洋沙蚕(Periserrula leucophryna)消化道中分离出一株革兰氏阴性、化能异养、兼性厌氧球菌,命名为IMCC1545(T)。IMCC1545(T)菌株的细胞不运动,通过二分分裂进行繁殖。主要脂肪酸为anteiso-C(15 : 0)和C(18 : 0)。呼吸醌为甲基萘醌-7,DNA的G+C含量为52.1 mol%。使用三种建树算法基于16S rRNA基因序列进行的系统发育分析表明,该菌株在“疣微菌门”内形成了一个新的属级谱系。与IMCC1545(T)菌株亲缘关系最近的已命名生物是“解岩藻聚糖岩藻球菌”SI-1234(16S rRNA基因序列相似性为86.5%)、溶琼脂交替球菌ADT3(T)(81.8%)和陆地奥皮杜斯菌PB90-1(T)(80.3%),它们属于“疣微菌门”的第4亚群。“疣微菌门”的第4亚群(在此命名为新奥皮杜斯纲)分为两个进化枝,一个进化枝包含IMCC1545(T)菌株,另一个进化枝包含陆地奥皮杜斯菌。根据本研究获得的分类学数据,建议将该新的海洋分离株归入一个新的属和种,命名为红斑球菌(Puniceicoccus vermicola),新属,新种(红斑球菌的模式菌株为IMCC1545(T)=KCCM 42343(T)=NBRC 101964(T)),置于新奥皮杜斯纲中的新红斑球菌科和新红斑球菌目中。还正式提出了新奥皮杜斯科和新奥皮杜斯目。