• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用质谱法进行蛋白质组分析——通过总离子流进行归一化是否可能掩盖一些生物学差异?

Proteomic profiling using mass spectrometry--does normalising by total ion current potentially mask some biological differences?

作者信息

Cairns David A, Thompson Douglas, Perkins David N, Stanley Anthea J, Selby Peter J, Banks Rosamonde E

机构信息

Clinical and Biomedical Proteomics Group, Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

出版信息

Proteomics. 2008 Jan;8(1):21-7. doi: 10.1002/pmic.200700598.

DOI:10.1002/pmic.200700598
PMID:18095358
Abstract

Normalisation of data to minimise the impact of technical variation on comparative sample analysis is often carried out. Using SELDI data as a model, we have examined the effects of normalisation by TIC which is commonly used for MS data. Significant intergroup differences in normalisation factor were found for serum profiles which could not be explained by experimental factors, implying that normalisation by TIC may in some situations also normalise biological differences and should be systematically evaluated.

摘要

通常会对数据进行归一化处理,以尽量减少技术变异对比较样本分析的影响。以表面增强激光解吸电离(SELDI)数据为模型,我们研究了总离子流(TIC)归一化的效果,TIC常用于质谱数据。在血清谱中发现归一化因子存在显著的组间差异,而这些差异无法用实验因素来解释,这意味着在某些情况下,通过TIC进行归一化也可能会使生物学差异归一化,因此应该进行系统评估。

相似文献

1
Proteomic profiling using mass spectrometry--does normalising by total ion current potentially mask some biological differences?使用质谱法进行蛋白质组分析——通过总离子流进行归一化是否可能掩盖一些生物学差异?
Proteomics. 2008 Jan;8(1):21-7. doi: 10.1002/pmic.200700598.
2
A novel approach using MALDI-TOF/TOF mass spectrometry and prestructured sample supports (AnchorChip Technology) for proteomic profiling and protein identification.一种使用基质辅助激光解吸电离飞行时间串联质谱(MALDI-TOF/TOF)和预结构化样品支持物(AnchorChip技术)进行蛋白质组分析和蛋白质鉴定的新方法。
Methods Mol Biol. 2008;441:57-70. doi: 10.1007/978-1-60327-047-2_4.
3
SELDI-TOF mass spectra: a view on sources of variation.表面增强激光解吸电离飞行时间质谱:变异来源之见解
J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Feb 15;847(1):12-23. doi: 10.1016/j.jchromb.2006.11.004. Epub 2006 Nov 21.
4
Proteomic data analysis workflow for discovery of candidate biomarker peaks predictive of clinical outcome for patients with acute myeloid leukemia.用于发现预测急性髓性白血病患者临床结局的候选生物标志物峰的蛋白质组学数据分析流程。
J Proteome Res. 2008 Jun;7(6):2332-41. doi: 10.1021/pr070482e. Epub 2008 May 2.
5
Reproducibility of serum protein profiling by systematic assessment using solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry.通过使用固相萃取和基质辅助激光解吸/电离质谱法进行系统评估来实现血清蛋白谱的重现性。
Rapid Commun Mass Spectrom. 2008;22(3):291-300. doi: 10.1002/rcm.3364.
6
The application of SELDI-TOF mass spectrometry to mammalian cell culture.
Biotechnol Adv. 2009 Mar-Apr;27(2):177-84. doi: 10.1016/j.biotechadv.2008.10.007. Epub 2008 Nov 13.
7
Serum proteomics and biomarkers in hepatocellular carcinoma and chronic liver disease.肝细胞癌和慢性肝病中的血清蛋白质组学与生物标志物
Clin Cancer Res. 2008 Jan 15;14(2):470-7. doi: 10.1158/1078-0432.CCR-07-0586.
8
Advanced proteomic technologies for cancer biomarker discovery.用于癌症生物标志物发现的先进蛋白质组学技术。
Expert Rev Proteomics. 2009 Apr;6(2):123-34. doi: 10.1586/epr.09.1.
9
Identification of lung cancer patients by serum protein profiling using surface-enhanced laser desorption/ionization time-of-flight mass spectrometry.使用表面增强激光解吸/电离飞行时间质谱法通过血清蛋白质谱分析鉴定肺癌患者
Am J Clin Oncol. 2008 Apr;31(2):133-9. doi: 10.1097/COC.0b013e318145b98b.
10
Clinical proteomics in breast cancer: a review.乳腺癌中的临床蛋白质组学:综述
Breast Cancer Res Treat. 2009 Jul;116(1):17-29. doi: 10.1007/s10549-008-0263-3. Epub 2008 Dec 11.

引用本文的文献

1
Exploratory Study on Application of MALDI-TOF-MS to Detect SARS-CoV-2 Infection in Human Saliva.基质辅助激光解吸电离飞行时间质谱检测人唾液中新型冠状病毒感染的探索性研究
J Clin Med. 2022 Jan 6;11(2):295. doi: 10.3390/jcm11020295.
2
Multivariate strategy for the sample selection and integration of multi-batch data in metabolomics.代谢组学中样本选择及多批次数据整合的多变量策略
Metabolomics. 2017;13(10):114. doi: 10.1007/s11306-017-1248-1. Epub 2017 Aug 24.
3
Statistical methods for handling unwanted variation in metabolomics data.处理代谢组学数据中不必要变异的统计方法。
Anal Chem. 2015 Apr 7;87(7):3606-15. doi: 10.1021/ac502439y. Epub 2015 Mar 6.
4
Current advances in systems and integrative biology.系统与综合生物学的最新进展。
Comput Struct Biotechnol J. 2014 Aug 27;11(18):35-46. doi: 10.1016/j.csbj.2014.08.007. eCollection 2014 Aug.
5
Improved signal processing and normalization for biomarker protein detection in broad-mass-range TOF mass spectra from clinical samples.改进生物标志物蛋白在临床样本宽质量范围飞行时间质谱中的信号处理和归一化。
Proteomics Clin Appl. 2011 Aug;5(7-8):440-7. doi: 10.1002/prca.201000095. Epub 2011 Jul 13.
6
Challenges for biomarker discovery in body fluids using SELDI-TOF-MS.使用表面增强激光解吸电离飞行时间质谱(SELDI-TOF-MS)在体液中发现生物标志物面临的挑战。
J Biomed Biotechnol. 2010;2010:906082. doi: 10.1155/2010/906082. Epub 2009 Dec 6.
7
Application of proteomic analysis to the study of renal diseases.蛋白质组学分析在肾脏疾病研究中的应用。
Nat Rev Nephrol. 2009 Dec;5(12):701-12. doi: 10.1038/nrneph.2009.183. Epub 2009 Oct 27.
8
Normalization and statistical analysis of quantitative proteomics data generated by metabolic labeling.代谢标记定量蛋白质组学数据的标准化和统计分析。
Mol Cell Proteomics. 2009 Oct;8(10):2227-42. doi: 10.1074/mcp.M800462-MCP200. Epub 2009 Jul 14.
9
Integrated multi-level quality control for proteomic profiling studies using mass spectrometry.使用质谱法进行蛋白质组分析研究的综合多层次质量控制
BMC Bioinformatics. 2008 Dec 4;9:519. doi: 10.1186/1471-2105-9-519.