Satulovsky Javier, Lui Roger, Wang Yu-li
Department of Physiology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Biophys J. 2008 May 1;94(9):3671-83. doi: 10.1529/biophysj.107.117002. Epub 2008 Jan 16.
We have developed a top-down, rule-based mathematical model to explore the basic principles that coordinate mechanochemical events during animal cell migration, particularly the local-stimulation-global-inhibition model suggested originally for chemotaxis. Cells were modeled as a shape machine that protrudes or retracts in response to a combination of local protrusion and global retraction signals. Using an optimization algorithm to identify parameters that generate specific shapes and migration patterns, we show that the mechanism of local stimulation global inhibition can readily account for the behavior of Dictyostelium under a large collection of conditions. Within this collection, some parameters showed strong correlation, indicating that a normal phenotype may be maintained by complementation among functional modules. In addition, comparison of parameters for control and nocodazole-treated Dictyostelium identified the most prominent effect of microtubules as regulating the rates of retraction and protrusion signal decay, and the extent of global inhibition. Other changes in parameters can lead to profound transformations from amoeboid cells into cells mimicking keratocytes, neurons, or fibroblasts. Thus, a simple circuit of local stimulation-global inhibition can account for a wide range of cell behaviors. A similar top-down approach may be applied to other complex problems and combined with molecular manipulations to define specific protein functions.
我们开发了一种自上而下的、基于规则的数学模型,以探索在动物细胞迁移过程中协调机械化学事件的基本原理,特别是最初针对趋化作用提出的局部刺激-全局抑制模型。细胞被建模为一个形状机器,它根据局部突出和全局收缩信号的组合而突出或收缩。通过使用优化算法来识别产生特定形状和迁移模式的参数,我们表明局部刺激全局抑制机制能够很容易地解释在大量条件下盘基网柄菌的行为。在这个集合中,一些参数显示出很强的相关性,表明正常表型可能通过功能模块之间的互补来维持。此外,对对照和诺考达唑处理的盘基网柄菌的参数比较确定了微管最显著的作用是调节收缩和突出信号衰减的速率以及全局抑制的程度。参数的其他变化可导致从变形虫样细胞向模仿角膜细胞、神经元或成纤维细胞的细胞发生深刻转变。因此,一个简单的局部刺激-全局抑制回路可以解释广泛的细胞行为。类似的自上而下的方法可能适用于其他复杂问题,并与分子操作相结合以定义特定蛋白质的功能。