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一种新型平菇双链RNA病毒的鉴定及病毒在蘑菇孢子中的分布测定。

The identification of a novel Pleurotus ostreatus dsRNA virus and determination of the distribution of viruses in mushroom spores.

作者信息

Kim Yeo Jin, Kim Ji Yeon, Kim Ji Hye, Yoon Seon Mee, Yoo Young-Bok, Yie Se Won

机构信息

Department of Molecular Bioscience, Division of Bioscience and Biotechnology, Kangwon National University, Chuncheon 200-701, Republic of Korea.

出版信息

J Microbiol. 2008 Feb;46(1):95-9. doi: 10.1007/s12275-007-0171-y.

DOI:10.1007/s12275-007-0171-y
PMID:18337700
Abstract

Double-stranded RNAs and virus particles were identified in Pleurotus ostreatus strain Shin-Nong in Korea. Isometric virus particles with a diameter of 33 nm were purified, which are similar to other Pleurotus viruses reported previously. This strain contains 5 dsRNAs, 8.0, 2.5, 2.4, 2.0, and 1.8 kb in size. The virus particles contain 2 dsRNAs, designated RNA-1 (2.5 kb), and RNA-2 (2.4 kb) which is a typical pattern of Partitiviridae. A non-encapsidated dsRNA of about 8.0 kb also was identified. Partial cDNA from RNA-1 was cloned, and sequence analysis revealed that this gene codes for RdRp. The comparison of the sequence from partial cDNA clone showed 35% amino acid homology with the C-terminal end of the RdRp gene of Helicobasidum mompa virus and Rosalinia necatrix virus. Specific primers designed from the partial sequences successfully amplified RT-PCR product from the infected mycelium and a single spore culture. We used these primers to determine the pattern of distribution of viruses in spores. Of the 96 different single spore cultures generated from Shin-Nong strain, a specific RT-PCR product was identified in 25 cultures, indicating that about 26% of basidiospores contain viruses.

摘要

在韩国的平菇新农菌株中鉴定出双链RNA和病毒颗粒。纯化出了直径为33 nm的等轴病毒颗粒,其与先前报道的其他平菇病毒相似。该菌株含有5条双链RNA,大小分别为8.0、2.5、2.4、2.0和1.8 kb。病毒颗粒含有2条双链RNA,分别命名为RNA-1(2.5 kb)和RNA-2(2.4 kb),这是双分病毒科的典型模式。还鉴定出了一条约8.0 kb的非衣壳双链RNA。克隆了RNA-1的部分cDNA,序列分析表明该基因编码RNA依赖性RNA聚合酶(RdRp)。部分cDNA克隆序列的比较显示,其与桑卷担菌病毒和紫纹羽病毒RdRp基因的C末端具有35%的氨基酸同源性。根据部分序列设计的特异性引物成功地从感染的菌丝体和单孢培养物中扩增出RT-PCR产物。我们使用这些引物来确定病毒在孢子中的分布模式。在从新农菌株产生的96种不同单孢培养物中,有25种培养物鉴定出特异性RT-PCR产物,这表明约26%的担孢子含有病毒。

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