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绘制细胞网络动力学的全局敏感性:敏感性热图和全局求和定律。

Mapping global sensitivity of cellular network dynamics: sensitivity heat maps and a global summation law.

作者信息

Rand D A

机构信息

Warwick Systems Biology & Mathematics Institute, University of Warwick, Coventry, UK.

出版信息

J R Soc Interface. 2008 Aug 6;5 Suppl 1(Suppl 1):S59-69. doi: 10.1098/rsif.2008.0084.focus.

Abstract

The dynamical systems arising from gene regulatory, signalling and metabolic networks are strongly nonlinear, have high-dimensional state spaces and depend on large numbers of parameters. Understanding the relation between the structure and the function for such systems is a considerable challenge. We need tools to identify key points of regulation, illuminate such issues as robustness and control and aid in the design of experiments. Here, I tackle this by developing new techniques for sensitivity analysis. In particular, I show how to globally analyse the sensitivity of a complex system by means of two new graphical objects: the sensitivity heat map and the parameter sensitivity spectrum. The approach to sensitivity analysis is global in the sense that it studies the variation in the whole of the model's solution rather than focusing on output variables one at a time, as in classical sensitivity analysis. This viewpoint relies on the discovery of local geometric rigidity for such systems, the mathematical insight that makes a practicable approach to such problems feasible for highly complex systems. In addition, we demonstrate a new summation theorem that substantially generalizes previous results for oscillatory and other dynamical phenomena. This theorem can be interpreted as a mathematical law stating the need for a balance between fragility and robustness in such systems.

摘要

基因调控网络、信号传导网络和代谢网络所产生的动力系统具有很强的非线性,拥有高维状态空间,且依赖大量参数。理解此类系统的结构与功能之间的关系是一项巨大挑战。我们需要工具来识别调控关键点,阐明诸如稳健性和控制等问题,并辅助实验设计。在此,我通过开发灵敏度分析的新技术来解决这一问题。具体而言,我展示了如何借助两个新的图形对象——灵敏度热图和参数灵敏度谱,对复杂系统进行全局灵敏度分析。这种灵敏度分析方法是全局性的,因为它研究的是整个模型解的变化,而不像经典灵敏度分析那样一次只关注输出变量。这一观点依赖于发现此类系统的局部几何刚性,这一数学见解使得针对高度复杂系统切实可行地解决此类问题成为可能。此外,我们证明了一个新的求和定理,该定理极大地推广了先前关于振荡及其他动力学现象的结果。这个定理可以被解释为一条数学定律,表明此类系统中脆弱性与稳健性之间需要保持平衡。

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