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生物开关中超敏感性的非平衡机制:麦克斯韦妖的传感作用

The nonequilibrium mechanism for ultrasensitivity in a biological switch: sensing by Maxwell's demons.

作者信息

Tu Yuhai

机构信息

T. J. Watson Research Center, IBM, P. O. Box 218, Yorktown Heights, NY 10598, USA.

出版信息

Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11737-41. doi: 10.1073/pnas.0804641105. Epub 2008 Aug 7.

DOI:10.1073/pnas.0804641105
PMID:18687900
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2575293/
Abstract

The Escherichia coli flagellar motor senses the intracellular concentration of the response regulator CheY-P and responds by varying the bias between its counterclockwise (CCW) and clockwise (CW) rotational states. The response is ultrasensitive with a large Hill coefficient (approximately 10). Recently, the detailed distribution functions of the CW and the CCW dwell times have been measured for different CW biases. Based on a general result on the properties of the dwell-time statistics for all equilibrium models, we show that the observed dwell-time statistics imply that the flagellar motor switch operates out of equilibrium, with energy dissipation. We propose a dissipative allosteric model that generates dwell-time statistics consistent with the experimental results. Our model reveals a general nonequilibrium mechanism for ultrasensitivity wherein the switch operates with a small energy expenditure to create high sensitivity. In contrast to the conventional equilibrium models, this mechanism does not require one to assume that CheY-P binds to the CCW and CW states with different affinities. The estimated energy consumption by the flagellar motor switch suggests that the transmembrane proton motive force, which drives the motor's rotation, may also power its switching. The existence of net transitional fluxes between microscopic states of the switch is predicted, measurement of these fluxes can test the nonequilibrium model directly. Both the results on the general properties of the dwell-time statistics and the mechanism for ultrasensitivity should be useful for understanding a diverse class of physical and biological systems.

摘要

大肠杆菌鞭毛马达感知应答调节因子CheY-P的细胞内浓度,并通过改变其逆时针(CCW)和顺时针(CW)旋转状态之间的偏向来做出响应。该响应具有超敏感性,希尔系数较大(约为10)。最近,针对不同的顺时针偏向,已测量了顺时针和逆时针停留时间的详细分布函数。基于所有平衡模型停留时间统计特性的一个一般结果,我们表明观察到的停留时间统计意味着鞭毛马达开关在非平衡状态下运行,存在能量耗散。我们提出了一个耗散变构模型,该模型产生的停留时间统计与实验结果一致。我们的模型揭示了一种超敏感性的一般非平衡机制,其中开关以少量能量消耗运行以产生高灵敏度。与传统的平衡模型不同,这种机制不需要假设CheY-P以不同亲和力结合到逆时针和顺时针状态。鞭毛马达开关的估计能量消耗表明,驱动马达旋转的跨膜质子动力也可能为其开关提供动力。预测了开关微观状态之间净过渡通量的存在,对这些通量的测量可以直接检验非平衡模型。停留时间统计的一般特性结果和超敏感性机制对于理解各种物理和生物系统都应该是有用的。