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A survey of genetic simulation software for population and epidemiological studies.用于人群和流行病学研究的遗传模拟软件调查。
Hum Genomics. 2008 Sep;3(1):79-86. doi: 10.1186/1479-7364-3-1-79.
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On extracting design principles from biology: II. Case study-the effect of knee direction on bipedal robot running efficiency.从生物学中提取设计原理：II. 案例研究——膝盖方向对双足机器人运行效率的影响
Bioinspir Biomim. 2015 Feb 2;10(1):016011. doi: 10.1088/1748-3190/10/1/016011.
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LINKERS: a simulation programming system for generating populations with genetic structure.
Comput Biol Med. 1990;20(2):135-44. doi: 10.1016/0010-4825(90)90036-o.
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An overview of the utility of population simulation software in molecular ecology.群体模拟软件在分子生态学中的应用概述。
Mol Ecol. 2014 May;23(10):2383-401. doi: 10.1111/mec.12741. Epub 2014 Apr 30.
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Efficient pedigree recording for fast population genetics simulation.高效的家系记录，实现快速的群体遗传学模拟。
PLoS Comput Biol. 2018 Nov 1;14(11):e1006581. doi: 10.1371/journal.pcbi.1006581. eCollection 2018 Nov.
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SPAGHETTI: simulation software to test genetic mapping programs.SPAGHETTI：用于测试遗传作图程序的模拟软件。
J Hered. 2010 Mar-Apr;101(2):257-9. doi: 10.1093/jhered/esp109. Epub 2009 Dec 3.
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COANCESTRY: a program for simulating, estimating and analysing relatedness and inbreeding coefficients.COANCESTRY：用于模拟、估计和分析亲缘关系和近交系数的程序。
Mol Ecol Resour. 2011 Jan;11(1):141-5. doi: 10.1111/j.1755-0998.2010.02885.x.
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SelSim: a program to simulate population genetic data with natural selection and recombination.SelSim：一个用于模拟具有自然选择和重组的群体遗传数据的程序。
Bioinformatics. 2004 Dec 12;20(18):3673-5. doi: 10.1093/bioinformatics/bth417. Epub 2004 Jul 22.
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Simulating smokers' acceptance of modifications in a cessation program.模拟吸烟者对戒烟计划中各项调整的接受程度。
Public Health Rep. 1992 Jan-Feb;107(1):81-92.
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POPSIM: a general population simulation program.
Bioinformatics. 1998 Jun;14(5):458-64. doi: 10.1093/bioinformatics/14.5.458.
引用本文的文献
1
Demes: a standard format for demographic models.人群：人口模型的标准格式。
Genetics. 2022 Nov 1;222(3). doi: 10.1093/genetics/iyac131.
2
Efficient ancestry and mutation simulation with msprime 1.0.利用 msprime 1.0 进行高效的祖先和突变模拟。
Genetics. 2022 Mar 3;220(3). doi: 10.1093/genetics/iyab229.
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AdmixSim 2: a forward-time simulator for modeling complex population admixture.AdmixSim 2：用于建模复杂人群混合的前向时间模拟器。
BMC Bioinformatics. 2021 Oct 18;22(1):506. doi: 10.1186/s12859-021-04415-x.
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OPENMENDEL: a cooperative programming project for statistical genetics.OPENMENDEL：一个用于统计遗传学的合作编程项目。
Hum Genet. 2020 Jan;139(1):61-71. doi: 10.1007/s00439-019-02001-z. Epub 2019 Mar 26.
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skelesim: an extensible, general framework for population genetic simulation in R.Skelesim：R语言中用于群体遗传模拟的可扩展通用框架。
Mol Ecol Resour. 2017 Jan;17(1):101-109. doi: 10.1111/1755-0998.12607. Epub 2016 Nov 16.
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Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes.大样本量的高效合并模拟和谱系分析
PLoS Comput Biol. 2016 May 4;12(5):e1004842. doi: 10.1371/journal.pcbi.1004842. eCollection 2016 May.
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Reproducible simulations of realistic samples for next-generation sequencing studies using Variant Simulation Tools.使用变异模拟工具对下一代测序研究的真实样本进行可重复模拟。
Genet Epidemiol. 2015 Jan;39(1):45-52. doi: 10.1002/gepi.21867. Epub 2014 Nov 13.
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Genetic simulation tools for post-genome wide association studies of complex diseases.用于复杂疾病基因组全关联研究后的遗传模拟工具。
Genet Epidemiol. 2015 Jan;39(1):11-19. doi: 10.1002/gepi.21870. Epub 2014 Nov 4.
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Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators.遗传模拟资源：一个用于注册和发现遗传数据模拟器的网站。
Bioinformatics. 2013 Apr 15;29(8):1101-2. doi: 10.1093/bioinformatics/btt094. Epub 2013 Feb 23.
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Computer programs and methodologies for the simulation of DNA sequence data with recombination.具有重组的 DNA 序列数据模拟的计算机程序和方法。
Front Genet. 2013 Feb 1;4:9. doi: 10.3389/fgene.2013.00009. eCollection 2013.
本文引用的文献
1
Mlcoalsim: multilocus coalescent simulations.Mlcoalsim：多基因座 coalescent 模拟。
Evol Bioinform Online. 2007 Mar 2;3:41-4.
2
GENOMEPOP: a program to simulate genomes in populations.GENOMEPOP：一个用于模拟群体基因组的程序。
BMC Bioinformatics. 2008 Apr 30;9:223. doi: 10.1186/1471-2105-9-223.
3
Exploring population genetic models with recombination using efficient forward-time simulations.使用高效的正向时间模拟探索具有重组的群体遗传模型。
Genetics. 2008 Apr;178(4):2417-27. doi: 10.1534/genetics.107.085332.
4
Forward-time simulations of non-random mating populations using simuPOP.使用simuPOP对非随机交配群体进行正向时间模拟。
Bioinformatics. 2008 Jun 1;24(11):1408-9. doi: 10.1093/bioinformatics/btn179. Epub 2008 Apr 15.
5
Generating samples for association studies based on HapMap data.基于HapMap数据生成用于关联研究的样本。
BMC Bioinformatics. 2008 Jan 24;9:44. doi: 10.1186/1471-2105-9-44.
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Recodon: coalescent simulation of coding DNA sequences with recombination, migration and demography.Recodon：具有重组、迁移和种群统计学特征的编码DNA序列的合并模拟。
BMC Bioinformatics. 2007 Nov 20;8:458. doi: 10.1186/1471-2105-8-458.
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GWAsimulator: a rapid whole-genome simulation program.GWAsimulator：一个快速的全基因组模拟程序。
Bioinformatics. 2008 Jan 1;24(1):140-2. doi: 10.1093/bioinformatics/btm549. Epub 2007 Nov 15.
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Sequence-level population simulations over large genomic regions.大型基因组区域的序列水平群体模拟。
Genetics. 2007 Nov;177(3):1725-31. doi: 10.1534/genetics.106.069088. Epub 2007 Oct 18.
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Simulating association studies: a data-based resampling method for candidate regions or whole genome scans.模拟关联研究：一种用于候选区域或全基因组扫描的基于数据的重采样方法。
Bioinformatics. 2007 Oct 1;23(19):2581-8. doi: 10.1093/bioinformatics/btm386. Epub 2007 Sep 4.
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The neutral coalescent process for recent gene duplications and copy-number variants.近期基因复制和拷贝数变异的中性合并过程。
Genetics. 2007 Oct;177(2):987-1000. doi: 10.1534/genetics.107.074948. Epub 2007 Aug 24.
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