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实时荧光定量 PCR TaqMan 法检测临床样本中的多瘤病毒 KIV 和 WUV。

Real time PCR TaqMan assays for detection of polyomaviruses KIV and WUV in clinical samples.

机构信息

Department of Public Health and Microbiology, Virology Unit, University of Turin, Via Santena 9, 10126 Turin, Italy.

出版信息

J Virol Methods. 2009 Dec;162(1-2):69-74. doi: 10.1016/j.jviromet.2009.07.016. Epub 2009 Jul 29.

DOI:10.1016/j.jviromet.2009.07.016
PMID:19646480
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7119675/
Abstract

Recently, polyomaviruses KI and WU were identified in the airways of patients with acute respiratory symptoms. The epidemiology and pathogenesis of these two viruses are not fully understood, and the development of molecular assays, such as Real Time PCR, was useful for examining their biology and role in different clinical syndromes. The evaluation of different target regions for the amplification of polyomaviruses KI and WU, comparing published primer/probe sets and sets designed in the laboratory is described and was used for testing 175 clinical specimens (84 stools and 91 tonsils). The results showed that the laboratory designs were more sensitive for the detection of polyomaviruses KI and WU DNA in clinical samples. The choice of the primer/probe set, and primarily of the region for amplification, may be relevant for understanding the pathogenic role of viruses such as polyomaviruses KI and WU.

摘要

最近,在急性呼吸道症状患者的气道中发现了多瘤病毒 KI 和 WU。这两种病毒的流行病学和发病机制尚未完全了解,分子检测方法(如实时 PCR)的发展有助于研究它们的生物学特性及其在不同临床综合征中的作用。本文描述了对不同靶区域进行扩增的评估,比较了已发表的引物/探针集和实验室设计的集,并用于检测 175 份临床标本(84 份粪便和 91 份扁桃体)。结果表明,实验室设计对临床样本中多瘤病毒 KI 和 WU DNA 的检测更敏感。引物/探针集的选择,主要是扩增区域的选择,可能与理解多瘤病毒 KI 和 WU 等病毒的致病作用有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4275/7119675/59746111a672/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4275/7119675/de051d940ef4/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4275/7119675/59746111a672/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4275/7119675/de051d940ef4/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4275/7119675/59746111a672/gr2.jpg

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本文引用的文献

1
Identification of the novel KI Polyomavirus in paranasal and lung tissues.在鼻旁组织和肺组织中鉴定新型KI多瘤病毒。
J Med Virol. 2009 Mar;81(3):558-61. doi: 10.1002/jmv.21417.
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The role of polyomaviruses in human disease.多瘤病毒在人类疾病中的作用。
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A single-tube, real-time PCR assay for detection of the two newly characterized human KI and WU polyomaviruses.一种用于检测两种新鉴定的人类KI和WU多瘤病毒的单管实时PCR检测方法。
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Med Microbiol Immunol. 2017 Apr;206(2):93-103. doi: 10.1007/s00430-016-0486-6. Epub 2016 Nov 10.
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Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice.绿藻病毒ATCV-1是人类口咽病毒组的一部分,与人类和小鼠的认知功能变化有关。
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Identification of a novel human polyomavirus in organs of the gastrointestinal tract.在胃肠道器官中鉴定出一种新型人类多瘤病毒。
PLoS One. 2013;8(3):e58021. doi: 10.1371/journal.pone.0058021. Epub 2013 Mar 13.
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The polyomaviruses WUPyV and KIPyV: a retrospective quantitative analysis in patients undergoing hematopoietic stem cell transplantation.多瘤病毒 WUPyV 和 KIPyV:造血干细胞移植患者的回顾性定量分析。
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9
KI and WU polyomaviruses and CD4+ cell counts in HIV-1-infected patients, Italy.意大利 HIV-1 感染者中的 KI 和 WU 多瘤病毒与 CD4+ 细胞计数。
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J Med Virol. 2008 Nov;80(11):2012-4. doi: 10.1002/jmv.21303.
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Detection and discrimination of WU/KI polyomaviruses by real-time PCR with melting curve analysis.通过带有熔解曲线分析的实时聚合酶链反应检测和鉴别WU/KI多瘤病毒
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Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses.用于检测新发现的KI和WU多瘤病毒的实时PCR检测方法的开发与评估
J Clin Virol. 2007 Sep;40(1):9-14. doi: 10.1016/j.jcv.2007.07.015. Epub 2007 Aug 21.
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