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越桔根瘤菌(Devosia yakushimensis),从野葛(Pueraria lobata (Willd.) Ohwi)的根瘤中分离得到。

Devosia yakushimensis sp. nov., isolated from root nodules of Pueraria lobata (Willd.) Ohwi.

机构信息

Institute of Molecular and Cellular Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-Ku, Tokyo 113-0032, Japan.

National Institute of Molecular Biology and Biotechnology, University of the Philippines - Los Baños, 4031 College, Laguna, Philippines.

出版信息

Int J Syst Evol Microbiol. 2010 Mar;60(Pt 3):627-632. doi: 10.1099/ijs.0.011254-0. Epub 2009 Aug 4.

Abstract

A Gram-negative, strictly aerobic bacterium, comprising non-endospore-forming motile rods (1.2-2.0 microm x 0.4-0.6 microm) with polar flagellae was isolated from root nodules of the leguminous plant Pueraria lobata (Willd.) Ohwi growing on the coast of Yakushima Island, Kagoshima Prefecture, Japan. The novel strain, designated Yak96B(T), grew at an optimum pH of 7.0 and an optimum temperature of 28 degrees C. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that the new strain was closely related to Devosia neptuniae J1(T) and Devosia chinhatensis IPL18(T), with sequence similarities of 98.1 % and 97.8 %, respectively. However, the DNA-DNA relatedness values of strain Yak96B(T) with D. neptuniae LMG 21357(T) and D. chinhatensis CCM 7426(T) were 53.6 % and 34 %, respectively. The DNA G+C content of strain Yak96B(T) was 65.3 mol%, the predominant isoprenoid quinone was Q10 (85 %) and the polar lipids were phosphatidylglycerol and diphosphatidylglycerol. The major fatty acids (>5 %) were 11-methyl C(18 : 1)omega7c (35.0 %), C(16 : 0) (22.4 %), C(18 : 1)omega7c (21.8 %), C(19 : 0) cyclo omega8c (6.8 %) and C(18 : 0) (5.4 %). The infection/nodulation test was negative and nifH and nodD genes were not detected. Based on its chemotaxonomic and physiological characteristics, strain Yak96B(T) represents a novel species of the genus Devosia, for which the name Devosia yakushimensis sp. nov. is proposed. The type strain is Yak96B(T) (=KCTC 22147(T)=NBRC 103855(T)=LMG 24299(T)).

摘要

一株革兰氏阴性、严格需氧的细菌,由非芽孢形成的运动杆(1.2-2.0μm x 0.4-0.6μm)组成,具有极生鞭毛,从日本鹿儿岛县屋久岛海岸生长的豆科植物野葛(Willd.)Ohwi 的根瘤中分离得到。该新型菌株命名为 Yak96B(T),最适 pH 值为 7.0,最适温度为 28°C。基于 16S rRNA 基因序列的系统发育分析表明,该新菌株与 Neptuniae J1(T)和 Chinhatensis IPL18(T)密切相关,序列相似性分别为 98.1%和 97.8%。然而,菌株 Yak96B(T)与 D.neptuniae LMG 21357(T)和 D.chinhatensis CCM 7426(T)的 DNA-DNA 相关性值分别为 53.6%和 34%。菌株 Yak96B(T)的 DNA G+C 含量为 65.3mol%,主要异戊二烯醌为 Q10(85%),极性脂为磷脂酰甘油和双磷脂酰甘油。主要脂肪酸(>5%)为 11-甲基 C(18 : 1)omega7c(35.0%)、C(16 : 0)(22.4%)、C(18 : 1)omega7c(21.8%)、C(19 : 0)环 omega8c(6.8%)和 C(18 : 0)(5.4%)。感染/结瘤试验为阴性,未检测到 nifH 和 nodD 基因。基于其化学分类学和生理特征,菌株 Yak96B(T)代表 Devosia 属的一个新种,命名为 Devosia yakushimensis sp. nov.。模式菌株为 Yak96B(T)=KCTC 22147(T)=NBRC 103855(T)=LMG 24299(T)。

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