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橙色鞘氨醇单胞菌,从山地土壤中分离得到,以及提议用 Albitalea 属来取代非法原核生物属名 Geomonas Khan 等人,2020 年。

Devosia aurantiaca sp. nov., Isolated from Mountain Soil and Proposal of Albitalea gen. nov. to Replace the Illegitimate Prokaryotic Genus Name Geomonas Khan et al. 2020.

机构信息

Department of Life Science, Chung-Ang University, 84, HeukSeok-Ro, Dongjak-Gu, Seoul, 06974, Republic of Korea.

出版信息

Curr Microbiol. 2021 Jul;78(7):2548-2555. doi: 10.1007/s00284-021-02515-8. Epub 2021 May 7.

DOI:10.1007/s00284-021-02515-8
PMID:33963447
Abstract

Strain H239, a gram-negative, strictly aerobic, and oxidase-positive, and catalase-negative bacterium, was isolated from mountain soil in Gangwon-do of South Korea. Colonies were orange colored, and cells were motile rods with a single polar flagellum. Growth was observed between 25 and 30 °C (optimum, 30 °C), between pH 7.0 and pH 9.0 (optimum, pH 7.5), and in the presence of 0-1.5% (w/v) NaCl (optimum 0.5-1%). Ubiquinone-10 was detected as the sole respiratory quinone. The major fatty acids (>10%) of strain H239 were C ω7c, C, and C. The polar lipids detected from strain H239 consisted of two unidentified glycolipids, two unidentified phospholipids, and three unidentified polar lipids. The G+C content of strain H239 based on its genome sequence was 62.0 mol%. Comparative 16S rRNA gene sequence analysis indicated that strain H239 was most closely related to Devosia chinhatensis IPL18 (97.7%), Devosia submarina KMM 9415 (97.7%), and Devosia yakushimensis Yak96B (97.3%). Phylogenetic analyses based on the 16S rRNA gene and whole-genome sequences revealed that strain H239 formed a distinct phyletic lineage as a new species within the genus Devosia. Based on its physiological, chemotaxonomic, and molecular properties, strain H239 represents a novel species of the genus Devosia, for which the name Devosia aurantiaca sp. nov. is proposed. The type strain is H239 (=KACC 21662=JCM 33930). In addition, because the prokaryotic genus name Geomonas Khan et al. 2020 is a later homonym of Geomonas Xu et al. 2020, the name is illegitimate (Principle 6 in the International Code of Nomenclature of Prokaryotes). Therefore, we propose to replace the problematic prokaryotic names Geomonas and Geomonas soli with Albitalea with Albitalea terrae, respectively.

摘要

菌株 H239 是一株革兰氏阴性、严格需氧、氧化酶阳性、过氧化氢酶阴性的细菌,从韩国江原道的山地土壤中分离得到。菌落呈橙色,细胞呈运动性杆状,有一个单极鞭毛。在 25-30°C(最佳温度 30°C)、pH7.0-pH9.0(最佳 pH7.5)和 0-1.5%(w/v)NaCl(最佳 0.5-1%)的条件下可以观察到生长。菌株 H239 检测到的唯一呼吸醌是泛醌-10。菌株 H239 的主要脂肪酸(>10%)为 C ω7c、C 和 C 。从菌株 H239 中检测到的极性脂类包括两种未鉴定的糖脂、两种未鉴定的磷脂和三种未鉴定的极性脂类。基于其基因组序列,菌株 H239 的 G+C 含量为 62.0mol%。比较 16S rRNA 基因序列分析表明,菌株 H239 与 Devosia chinhatensis IPL18(97.7%)、Devosia submarina KMM 9415(97.7%)和 Devosia yakushimensis Yak96B(97.3%)最为密切相关。基于 16S rRNA 基因和全基因组序列的系统发育分析表明,菌株 H239 在 Devosia 属内形成了一个独特的进化枝,是一个新的物种。根据其生理、化学分类学和分子特性,菌株 H239 代表 Devosia 属的一个新种,建议将其命名为 Devosia aurantiaca sp. nov. 。模式菌株为 H239(=KACC 21662=JCM 33930)。此外,由于原核生物属名 Geomonas Khan 等人 2020 是 Geomonas Xu 等人 2020 的晚同名,因此该名称是不合法的(《原核生物国际命名法规》第 6 原则)。因此,我们建议分别将有问题的原核生物名称 Geomonas 和 Geomonas soli 用 Albitalea terrae 替代。

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