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利用 RNAi 筛选技术鉴定参与病毒复制的宿主蛋白。

The use of RNAi-based screens to identify host proteins involved in viral replication.

机构信息

Vaccine & Gene Therapy Institute, Oregon Health & Science University, 505 NW 185th Avenue, Beaverton, OR 97006, USA.

出版信息

Future Microbiol. 2010 Feb;5(2):303-11. doi: 10.2217/fmb.09.121.

DOI:10.2217/fmb.09.121
PMID:20143951
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2864646/
Abstract

The recent development of RNAi-based techniques for protein knockdown in mammalian cells has allowed for unprecedented flexibility in the study of protein function. Currently, large siRNA libraries are available that allow the knockdown of all proteins known to be encoded by the human genome. These libraries have been used to identify the host proteins required for the replication of several clinically important viruses, including HIV, flaviviruses and influenza. This review summarizes the methods used in RNAi-based screening for host factors involved in virus replication, and discusses published examples of such screens.

摘要

近年来,基于 RNAi 的技术在哺乳动物细胞中实现了蛋白质的敲低,这为研究蛋白质功能提供了前所未有的灵活性。目前,已经有大量的 siRNA 文库可供使用,这些文库可以实现对已知由人类基因组编码的所有蛋白质的敲低。这些文库已被用于鉴定几种临床重要病毒(包括 HIV、黄病毒和流感病毒)复制所必需的宿主蛋白。本文综述了基于 RNAi 的宿主因子筛选方法在病毒复制中的应用,并讨论了已发表的此类筛选的例子。

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本文引用的文献

1
Statistical methods for analysis of high-throughput RNA interference screens.用于高通量RNA干扰筛选分析的统计方法
Nat Methods. 2009 Aug;6(8):569-75. doi: 10.1038/nmeth.1351.
2
Kinases required in hepatitis C virus entry and replication highlighted by small interference RNA screening.通过小干扰RNA筛选突出显示的丙型肝炎病毒进入和复制所需的激酶
FASEB J. 2009 Nov;23(11):3780-9. doi: 10.1096/fj.09-131920. Epub 2009 Jul 16.
3
What have RNAi screens taught us about viral-host interactions?RNA干扰筛选让我们对病毒与宿主的相互作用有了哪些了解?
Curr Opin Microbiol. 2009 Aug;12(4):446-52. doi: 10.1016/j.mib.2009.06.002. Epub 2009 Jul 1.
4
The 2009 H1N1 influenza outbreak in its historical context.2009年甲型H1N1流感疫情的历史背景。
J Clin Virol. 2009 Jul;45(3):174-8. doi: 10.1016/j.jcv.2009.06.004. Epub 2009 Jun 11.
5
Host cell factors in HIV replication: meta-analysis of genome-wide studies.HIV复制中的宿主细胞因子:全基因组研究的荟萃分析
PLoS Pathog. 2009 May;5(5):e1000437. doi: 10.1371/journal.ppat.1000437. Epub 2009 May 29.
6
A genome-wide short hairpin RNA screening of jurkat T-cells for human proteins contributing to productive HIV-1 replication.对Jurkat T细胞进行全基因组短发夹RNA筛选,以寻找有助于HIV-1有效复制的人类蛋白质。
J Biol Chem. 2009 Jul 17;284(29):19463-73. doi: 10.1074/jbc.M109.010033. Epub 2009 May 20.
7
Discovery of insect and human dengue virus host factors.昆虫和人类登革热病毒宿主因子的发现。
Nature. 2009 Apr 23;458(7241):1047-50. doi: 10.1038/nature07967.
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Roles for endocytic trafficking and phosphatidylinositol 4-kinase III alpha in hepatitis C virus replication.内吞运输和磷脂酰肌醇4激酶IIIα在丙型肝炎病毒复制中的作用。
Proc Natl Acad Sci U S A. 2009 May 5;106(18):7577-82. doi: 10.1073/pnas.0902693106. Epub 2009 Apr 17.
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Identification of a lipid kinase as a host factor involved in hepatitis C virus RNA replication.鉴定一种脂质激酶作为参与丙型肝炎病毒RNA复制的宿主因子。
Virology. 2009 Apr 25;387(1):5-10. doi: 10.1016/j.virol.2009.02.039. Epub 2009 Mar 21.
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A functional genomic screen identifies cellular cofactors of hepatitis C virus replication.一项功能基因组筛选鉴定出丙型肝炎病毒复制的细胞辅助因子。
Cell Host Microbe. 2009 Mar 19;5(3):298-307. doi: 10.1016/j.chom.2009.02.001.