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大肠杆菌复制叉处的DNA中间体:dUTP的作用

DNA intermediates at the Escherichia coli replication fork: effect of dUTP.

作者信息

Olivera B M

出版信息

Proc Natl Acad Sci U S A. 1978 Jan;75(1):238-42. doi: 10.1073/pnas.75.1.238.

DOI:10.1073/pnas.75.1.238
PMID:203932
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC411221/
Abstract

We have directly tested the hypothesis that elevated levels of dUTP cause the formation of small DNA fragments at the replication fork of Escherichia coli. Addition of increasing levels of dUTP to lysates on cellophane discs results in an increasing number of strand scissions in the newly replicated DNA. Lysates of strains defective in dUTPase produce many more scissions at the same level of dUTP. The size distribution of Okazaki pieces obtained in vivo can be reconstituted in vitro on cellophane discs if appropriate levels of dUTP are present. Although uracil excision leads to the apparent production of Okazaki pieces from both daughter strands, DNA synthesis is actually asymmetric under these conditions. De novo chain initiation events occur on only one strand. It is suggested that asymmetry of synthesis in vivo may be masked by uracil excision and other postreplication processing mechanisms.

摘要

我们直接验证了这样一个假说

脱氧尿苷三磷酸(dUTP)水平升高会导致大肠杆菌复制叉处形成小的DNA片段。在玻璃纸圆盘上的裂解物中添加不断增加水平的dUTP,会导致新复制的DNA中链断裂的数量增加。dUTPase缺陷型菌株的裂解物在相同dUTP水平下会产生更多的链断裂。如果存在适当水平的dUTP,体内获得的冈崎片段的大小分布可以在玻璃纸圆盘上进行体外重构。尽管尿嘧啶切除会导致两条子链上明显产生冈崎片段,但在这些条件下DNA合成实际上是不对称的。从头链起始事件仅发生在一条链上。有人提出,体内合成的不对称性可能被尿嘧啶切除和其他复制后加工机制所掩盖。

相似文献

1
DNA intermediates at the Escherichia coli replication fork: effect of dUTP.大肠杆菌复制叉处的DNA中间体:dUTP的作用
Proc Natl Acad Sci U S A. 1978 Jan;75(1):238-42. doi: 10.1073/pnas.75.1.238.
2
Uracil incorporation: a source of pulse-labeled DNA fragments in the replication of the Escherichia coli chromosome.尿嘧啶掺入:大肠杆菌染色体复制中脉冲标记DNA片段的一个来源。
Proc Natl Acad Sci U S A. 1978 Jan;75(1):233-7. doi: 10.1073/pnas.75.1.233.
3
Evidence that both growing DNA chains at a replication fork are synthesized discontinuously.
Biochemistry. 1976 May 4;15(9):1838-43. doi: 10.1021/bi00654a008.
4
Formation of Okazaki pieces at the Escherichia coli replication fork in vitro.
Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:231-7. doi: 10.1101/sqb.1979.043.01.028.
5
The incorporation of uracil into animal cell DNA in vitro.体外将尿嘧啶掺入动物细胞DNA中。
Cell. 1978 Sep;15(1):131-40. doi: 10.1016/0092-8674(78)90089-2.
6
Ficellomycin and feldamycin; inhibitors of bacterial semiconservative DNA replication.菲西洛霉素和费尔德霉素;细菌半保留DNA复制的抑制剂。
Biochemistry. 1977 Jul 26;16(15):3406-12. doi: 10.1021/bi00634a018.
7
Transient accumulation of Okazaki fragments as a result of uracil incorporation into nascent DNA.由于尿嘧啶掺入新生DNA而导致冈崎片段的短暂积累。
Proc Natl Acad Sci U S A. 1977 Jan;74(1):154-7. doi: 10.1073/pnas.74.1.154.
8
Uracil incorporation into nascent DNA of Bacillus subtilis and Escherichia coli.
Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:239-42. doi: 10.1101/sqb.1979.043.01.029.
9
Low-molecular-weight DNA replication intermediates in Escherichia coli: mechanism of formation and strand specificity.大肠杆菌中低分子量 DNA 复制中间体:形成机制和链特异性。
J Mol Biol. 2013 Nov 15;425(22):4177-91. doi: 10.1016/j.jmb.2013.07.021. Epub 2013 Jul 20.
10
Deoxyuridine triphosphatase of Escherichia coli. Purification, properties, and use as a reagent to reduce uracil incorporation into DNA.
J Biol Chem. 1978 May 10;253(9):3305-12.

引用本文的文献

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Repriming DNA synthesis: an intrinsic restart pathway that maintains efficient genome replication.重新启动 DNA 合成:维持高效基因组复制的内在重启动途径。
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Near-continuously synthesized leading strands in are broken by ribonucleotide excision.在 中,连续合成的领头链被核苷酸切除修复打断。
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Low-molecular-weight DNA replication intermediates in Escherichia coli: mechanism of formation and strand specificity.大肠杆菌中低分子量 DNA 复制中间体:形成机制和链特异性。
J Mol Biol. 2013 Nov 15;425(22):4177-91. doi: 10.1016/j.jmb.2013.07.021. Epub 2013 Jul 20.
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Polyphosphate accumulation in Escherichia coli in response to defects in DNA metabolism.大肠杆菌中多聚磷酸盐的积累对DNA代谢缺陷的响应
J Bacteriol. 2009 Dec;191(24):7410-6. doi: 10.1128/JB.01138-09. Epub 2009 Oct 16.
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Phage phi29 protein p56 prevents viral DNA replication impairment caused by uracil excision activity of uracil-DNA glycosylase.噬菌体φ29蛋白p56可防止由尿嘧啶-DNA糖基化酶的尿嘧啶切除活性导致的病毒DNA复制损伤。
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Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda.大肠杆菌和噬菌体λ中DNA损伤的重组修复
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7
Antifolate-induced misincorporation of deoxyuridine monophosphate into DNA: inhibition of high molecular weight DNA synthesis in human lymphoblastoid cells.抗叶酸导致脱氧尿苷单磷酸错误掺入DNA:对人淋巴母细胞样细胞中高分子量DNA合成的抑制作用
Proc Natl Acad Sci U S A. 1981 Feb;78(2):917-21. doi: 10.1073/pnas.78.2.917.
8
Incorporation of thymine-containing DNA precursors in wild-type and mutant T4-infected plasmolysed cells.含胸腺嘧啶的DNA前体在野生型和突变型T4感染的质壁分离细胞中的掺入。
Mol Gen Genet. 1983;191(3):382-8. doi: 10.1007/BF00425750.
9
Flexibility in RNA priming of Okazaki pieces at the E. coli replication fork.大肠杆菌复制叉处冈崎片段RNA引发的灵活性。
Nucleic Acids Res. 1983 Sep 24;11(18):6531-9. doi: 10.1093/nar/11.18.6531.
10
Selection by genetic transformation of a Saccharomyces cerevisiae mutant defective for the nuclear uracil-DNA-glycosylase.通过基因转化选择酿酒酵母中一种核尿嘧啶-DNA-糖基化酶缺陷型突变体。
J Bacteriol. 1986 Jun;166(3):905-13. doi: 10.1128/jb.166.3.905-913.1986.

本文引用的文献

1
Mechanism of DNA chain growth. I. Possible discontinuity and unusual secondary structure of newly synthesized chains.DNA链生长的机制。I. 新合成链可能的不连续性和异常二级结构。
Proc Natl Acad Sci U S A. 1968 Feb;59(2):598-605. doi: 10.1073/pnas.59.2.598.
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Slow joining of newly replicated DNA chains in DNA polymerase I-deficient Escherichia coli mutants.DNA聚合酶I缺陷型大肠杆菌突变体中新复制DNA链的缓慢连接。
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DNA synthesis in nucleotide-permeable Escherichia coli cells. II. Synthesis of replicative from DNA of phage phi X174.核苷酸可通透的大肠杆菌细胞中的DNA合成。II. 噬菌体φX174 DNA复制型的合成
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A possible function of DNA polymerase in chromosome replication.DNA聚合酶在染色体复制中的一种可能功能。
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Multienzyme systems of DNA replication.DNA复制的多酶系统
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Replication of Escherichia coli requires DNA polymerase I.大肠杆菌的复制需要DNA聚合酶I。
Nature. 1974 Aug 9;250(5466):513-4. doi: 10.1038/250513a0.
7
An N-glycosidase from Escherichia coli that releases free uracil from DNA containing deaminated cytosine residues.一种来自大肠杆菌的N-糖苷酶,可从含有脱氨基胞嘧啶残基的DNA中释放游离尿嘧啶。
Proc Natl Acad Sci U S A. 1974 Sep;71(9):3649-53. doi: 10.1073/pnas.71.9.3649.
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Conversion of phiX174 viral DNA to double-stranded form by purified Escherichia coli proteins.用纯化的大肠杆菌蛋白将φX174病毒DNA转化为双链形式。
Proc Natl Acad Sci U S A. 1974 Oct;71(10):4120-4. doi: 10.1073/pnas.71.10.4120.
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Genetic control over the initiation of the synthesis of the short deoxynucleotide chains in E. coli.大肠杆菌中短脱氧核苷酸链合成起始的遗传控制。
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Cross hybridization and rate of chain elongation of the two classes of DNA intermediates.
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